RNA id: TCONS_00003430


Basic Information

Item Value
RNA id TCONS_00003430
length 960
lncRNA type antisense_over
GC content 0.33
exon number 2
gene id XLOC_001317
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 31598318 ~ 31600848 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

aaaacctcTTTGAAAGCGTTCACTTATTTTCAAAACTTTGGGGTTATTAGGTACATTTTATGAttgttaaataatacaattatatctttaaaaaaatagccatttaaatttaataacatAACTTTTTAACACTCCAGTCATCTGGAAAGACACATGATTTCTGTTTCACAAGGTAATATTTGATTAAACTCTTTAAAAACCATAAACAAATCTTTCTAAAGTTTAGTCATGACTAAAGACATTACTTTGTGTTTAGACTGTTTGTTATTTAGCAGTTAGCTAACTGCTAGTTGTACTACTAAAAACGTTAGCTaacttaaagtcagcatgaacccAATAGTATCGGTAAGCAGACCTGGATGTGCAAGCTGAGACTGCGTTTCTCAAAAATGcagtcagacacaatgcactcagtggaCCAGTGACGCTTCTGTGAGGTCTAAGGTTAGGTGAgcatattaaagacaTTGCATGAAGCTCAGCTAACaactgcatccagacccctctcgatgAACTTGAAGTTGCTGAGAGTTTCATTTCAGTATGTTGGAGAACTTTCAtctgaaactaaatattgattaaggggcagggctttctttttgGGCATCATTCCGTCATAGCAAACCAATGATAAAAGGGGCATGATTAAGAATAATATGATTGAAGAGATCAAACCGAAGTAAAAAAACTGGACTGCCACTCCAAACACAAATGATCAGACTTTGATTTTTCAGTGGATAAAATAGTGCATAATAGTTCAGCTAAAGAATTACAGTGTATGCTAGCAAAATCaacattgttcatttttattttacactgaCTTTAAGCACTAAAAAGAGAAATCACTTAACTTGTTTTGCAATAGTCCATCAAATCAAAAGACAAacctttatttaatctttttttaatagcAATGTTTGATCATGTTCAGTCTGATAGTTATATTGCATTCAACCATAG

Function

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0048468 cell development biological_process
GO:0090257 regulation of muscle system process biological_process
GO:0050879 multicellular organismal movement biological_process
GO:0050881 musculoskeletal movement biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0022610 biological adhesion biological_process
GO:0007517 muscle organ development biological_process
GO:0006936 muscle contraction biological_process
GO:0006937 regulation of muscle contraction biological_process
GO:0030154 cell differentiation biological_process
GO:0006941 striated muscle contraction biological_process
GO:0006942 regulation of striated muscle contraction biological_process
GO:0055001 muscle cell development biological_process
GO:0055002 striated muscle cell development biological_process
GO:0048856 anatomical structure development biological_process
GO:0030239 myofibril assembly biological_process
GO:0048869 cellular developmental process biological_process
GO:0003008 system process biological_process
GO:0003009 skeletal muscle contraction biological_process
GO:0003012 muscle system process biological_process
GO:0003015 heart process biological_process
GO:0061061 muscle structure development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0060537 muscle tissue development biological_process
GO:0060538 skeletal muscle organ development biological_process
GO:0014706 striated muscle tissue development biological_process
GO:0007155 cell adhesion biological_process
GO:0060047 heart contraction biological_process
GO:0042383 sarcolemma cellular_component
GO:0099080 supramolecular complex cellular_component
GO:0099081 supramolecular polymer cellular_component
GO:0043292 contractile fiber cellular_component
GO:0044449 obsolete contractile fiber part cellular_component
GO:0031012 extracellular matrix cellular_component
GO:0062023 collagen-containing extracellular matrix cellular_component
GO:0036379 myofilament cellular_component
GO:0005865 striated muscle thin filament cellular_component
GO:0016528 sarcoplasm cellular_component
GO:0016529 sarcoplasmic reticulum cellular_component
GO:0015629 actin cytoskeleton cellular_component
GO:0005901 caveola cellular_component
GO:0099512 supramolecular fiber cellular_component
GO:0044853 plasma membrane raft cellular_component
GO:0030016 myofibril cellular_component
GO:0030017 sarcomere cellular_component
GO:0070161 anchoring junction cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00002155 lncRNA downstream 82237 31514641 ~ 31516081 (-) True XLOC_001315
TCONS_00002152 lncRNA downstream 86154 31508778 ~ 31512164 (-) False XLOC_001315
TCONS_00002149 lncRNA downstream 302072 31288536 ~ 31296246 (-) True XLOC_001313
TCONS_00002142 lncRNA downstream 675177 30919336 ~ 30923141 (-) True XLOC_001309
TCONS_00002959 lncRNA downstream 719472 30838563 ~ 30878846 (-) True XLOC_001308
TCONS_00002159 lncRNA upstream 208325 31809173 ~ 31856630 (-) False XLOC_001319
TCONS_00002160 lncRNA upstream 208325 31809173 ~ 31856676 (-) False XLOC_001319
TCONS_00002162 lncRNA upstream 252145 31852993 ~ 31856641 (-) True XLOC_001319
TCONS_00003431 lncRNA upstream 508506 32109354 ~ 32111482 (-) False XLOC_001320
TCONS_00003432 lncRNA upstream 508506 32109354 ~ 32111870 (-) True XLOC_001320
TCONS_00002156 mRNA downstream 64229 31531990 ~ 31534089 (-) True XLOC_001316
TCONS_00002151 mRNA downstream 82206 31508739 ~ 31516112 (-) False XLOC_001315
TCONS_00002154 mRNA downstream 82227 31509530 ~ 31516091 (-) False XLOC_001315
TCONS_00002153 mRNA downstream 82572 31509028 ~ 31515746 (-) False XLOC_001315
TCONS_00002150 mRNA downstream 93174 31374751 ~ 31505144 (-) True XLOC_001314
TCONS_00002157 mRNA upstream 53355 31654203 ~ 31657854 (-) False XLOC_001318
TCONS_00002158 mRNA upstream 53416 31654264 ~ 31657644 (-) True XLOC_001318
TCONS_00002161 mRNA upstream 208337 31809185 ~ 31856622 (-) False XLOC_001319
TCONS_00002163 mRNA upstream 496331 32097179 ~ 32111882 (-) False XLOC_001320
TCONS_00002164 mRNA upstream 500236 32101084 ~ 32111924 (-) False XLOC_001320
TCONS_00002139 other downstream 836064 30736570 ~ 30762254 (-) True XLOC_001306
TCONS_00002135 other downstream 956782 30618480 ~ 30641536 (-) True XLOC_001304
TCONS_00002134 other downstream 985828 30589243 ~ 30612490 (-) False XLOC_001304
TCONS_00002121 other downstream 1353673 30244531 ~ 30244645 (-) True XLOC_001298
TCONS_00002109 other downstream 2413091 29175462 ~ 29185227 (-) True XLOC_001290
TCONS_00002165 other upstream 715487 32316335 ~ 32318911 (-) True XLOC_001321
TCONS_00002166 other upstream 1400711 33001559 ~ 33001673 (-) True XLOC_001323
TCONS_00002172 other upstream 1764335 33365183 ~ 33379968 (-) False XLOC_001325
TCONS_00002186 other upstream 2845760 34446608 ~ 34450574 (-) True XLOC_001331
TCONS_00002191 other upstream 3067388 34668236 ~ 34668351 (-) True XLOC_001333

Expression Profile

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