RNA id: TCONS_00002134


Basic Information

Item Value
RNA id TCONS_00002134
length 753
RNA type processed_transcript
GC content 0.50
exon number 5
gene id XLOC_001304
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 30585140 ~ 30689004 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACATTCCGGCAGACACCATGCTTTTAGGAAGCCTAGAGGAGAGGAAGACAGGCGAAGAGAGCGAGACGGGCAGCGAGGGGAGCTGACAGTGAGCGAGAGCCGACAGAAGCGCAAGACCGATTGTTTTCCTCTTTGAAACACCTTGAATGTGACAGAGGCATCTCTCTTCTGCCAAGATGTGAAGATCAGATAGTGTGAGATTAAGATGCTTTGGTCAGCTAAGTGAATCCGCAGAGATAAGGGAGGGAAGAAAATGTCCTGTGCACCCCGACATCACGGGACAGCTATGAGAGATTGTCTCATTCTGGGCCAACATTACCTCCAGGATTCCCTGCTCCGTTGCTCTTTCCTGAAGGCCTGTCCTCCATAGAAACCCTTCTCACCAACATACAGGGTTTGTTAAAGGTGGCTATTGATAATGCACGAGCGCAAGAGAAGCAGGTTCAGCTGGAGCGCACAGAGCTGAAGATGGAGCTGTACAGGGAGAGAGAGCTGCGCGAGACACTAGAGAGACAGCTCTGTGTGGAGCAGAAAAACAGAGCGCTCATCCAGAAGCGACTGAAGAAGGAGAAGAAGACCAAGAGAAAACTGCAGGAGGCTCTGGAGGTGGAGTCTAAGAGAAGAGACCATGCTGAGCAGACGCTTCAGAGGACAACTTCCTGTGAGAGATCACCCATTCACAACGACTCTCAACAGGAATTGGAGACAATCCATAATACCAGCAAAACAGACACTGAGAGAACAATACAAGGT

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0005667 transcription regulator complex cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-020402-5 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be part of transcription regulator complex. Predicted to be active in nucleus. Is expressed in several structures, including brain; neural crest; pectoral fin musculature; pronephros; and trigeminal ganglion.

Ensembl:

ensembl_id ENSDART00000135617

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00002124 lncRNA downstream 148183 30439422 ~ 30441060 (-) True XLOC_001301
TCONS_00002122 lncRNA downstream 254414 30333202 ~ 30334829 (-) True XLOC_001299
TCONS_00002112 lncRNA downstream 930466 29653949 ~ 29658777 (-) True XLOC_001294
TCONS_00002110 lncRNA downstream 1262295 29323374 ~ 29326948 (-) True XLOC_001292
TCONS_00003428 lncRNA downstream 1410935 29176676 ~ 29178308 (-) True XLOC_001291
TCONS_00002958 lncRNA upstream 215866 30828356 ~ 30842747 (-) False XLOC_001307
TCONS_00003429 lncRNA upstream 217088 30829578 ~ 30841415 (-) False XLOC_001307
TCONS_00002140 lncRNA upstream 217507 30829997 ~ 30831196 (-) False XLOC_001307
TCONS_00002959 lncRNA upstream 226073 30838563 ~ 30878846 (-) True XLOC_001308
TCONS_00002141 lncRNA upstream 227726 30840216 ~ 30841415 (-) True XLOC_001307
TCONS_00002131 mRNA downstream 21018 30539971 ~ 30568225 (-) False XLOC_001303
TCONS_00002132 mRNA downstream 21018 30539982 ~ 30568225 (-) True XLOC_001303
TCONS_00002128 mRNA downstream 78286 30443294 ~ 30510957 (-) False XLOC_001302
TCONS_00002127 mRNA downstream 78404 30443239 ~ 30510839 (-) False XLOC_001302
TCONS_00002125 mRNA downstream 115821 30443193 ~ 30473422 (-) False XLOC_001302
TCONS_00002136 mRNA upstream 105756 30718246 ~ 30723241 (-) False XLOC_001305
TCONS_00002137 mRNA upstream 107327 30719817 ~ 30723258 (-) True XLOC_001305
TCONS_00002138 mRNA upstream 123959 30736449 ~ 30762264 (-) False XLOC_001306
TCONS_00002143 mRNA upstream 365446 30977936 ~ 30979707 (-) True XLOC_001310
TCONS_00002144 mRNA upstream 459218 31071708 ~ 31105376 (-) False XLOC_001311
TCONS_00002121 other downstream 344598 30244531 ~ 30244645 (-) True XLOC_001298
TCONS_00002109 other downstream 1404016 29175462 ~ 29185227 (-) True XLOC_001290
TCONS_00002108 other downstream 1413543 29174903 ~ 29175700 (-) False XLOC_001290
TCONS_00002105 other downstream 1450668 29111261 ~ 29138575 (-) True XLOC_001288
TCONS_00002101 other downstream 1527916 29058272 ~ 29061327 (-) False XLOC_001287
TCONS_00002135 other upstream 5990 30618480 ~ 30641536 (-) True XLOC_001304
TCONS_00002139 other upstream 124080 30736570 ~ 30762254 (-) True XLOC_001306
TCONS_00002165 other upstream 1703845 32316335 ~ 32318911 (-) True XLOC_001321
TCONS_00002166 other upstream 2389069 33001559 ~ 33001673 (-) True XLOC_001323
TCONS_00002172 other upstream 2752693 33365183 ~ 33379968 (-) False XLOC_001325

Expression Profile

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