RNA id: TCONS_00002136


Basic Information

Item Value
RNA id TCONS_00002136
length 722
RNA type mRNA
GC content 0.38
exon number 3
gene id XLOC_001305
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 30718246 ~ 30723258 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TAACGGCTGACAGTTAGTTCATGCTTGTTGTTGAATGCGTTTTATATTTTTCACCCTTGTTGTAAGTTCGCGAATGGTGAGAGAACGCCAGCAACTAACGTTTACAGAGATAGACGCATCAGTGTCGTCTGAATGAAAGATAGTGCGCTGTTAAGTAATCATATAGCTTTAGCAACGATAGCATCATGGCTAGTCCTGCAAGCGCAAACATGAACGCTGTCCGCGAGACCATGGATGTTCTCCTGGAGATATCAAGGCTGCTGAATACAGGATTGGACATGGAGTCTTTGTCAATATGTGTCCGTCTCTGTGAGCAGGGGATCAATCCCGAAGCCCTGTCATCAGTTATCAAAGAACTCAGAAGAGCCTCAGACTCACTAAAGGCTTCTGAAAACAGCACTAGTCAAGGATGACCAGTCAAACATGGGTGCCTGACAGAGTGGACTTGAAGAAAgaaaattgtatataaatatatacatataattaatgTATGAAAACAGTTGAATTTTGCCTTGTATTTGAAGTTTTGCCTACATTAATGTGCCTCACTATGTACAATTGGACTCTTTaagcatgtttttgtttgtttgtatgtccaTTCAATGTCGTTTATACTTATAACAAAAAATTATGTCAAttctaaaagacaaaaaaaaatctgtcctcTGGAAACCTTGTTGATTTTGCTCCAGATTAAGTCAGTAAAGTTGTTTTTATCTTTA

Function

GO: NA

KEGG:

id description
ko04812 Cytoskeleton proteins

Ensembl:

ensembl_id ENSDART00000152175

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00002124 lncRNA downstream 277186 30439422 ~ 30441060 (-) True XLOC_001301
TCONS_00002122 lncRNA downstream 383417 30333202 ~ 30334829 (-) True XLOC_001299
TCONS_00002112 lncRNA downstream 1059469 29653949 ~ 29658777 (-) True XLOC_001294
TCONS_00002110 lncRNA downstream 1391298 29323374 ~ 29326948 (-) True XLOC_001292
TCONS_00003428 lncRNA downstream 1539938 29176676 ~ 29178308 (-) True XLOC_001291
TCONS_00002958 lncRNA upstream 105115 30828356 ~ 30842747 (-) False XLOC_001307
TCONS_00003429 lncRNA upstream 106337 30829578 ~ 30841415 (-) False XLOC_001307
TCONS_00002140 lncRNA upstream 106756 30829997 ~ 30831196 (-) False XLOC_001307
TCONS_00002959 lncRNA upstream 115322 30838563 ~ 30878846 (-) True XLOC_001308
TCONS_00002141 lncRNA upstream 116975 30840216 ~ 30841415 (-) True XLOC_001307
TCONS_00002133 mRNA downstream 29242 30585140 ~ 30689004 (-) False XLOC_001304
TCONS_00002131 mRNA downstream 150021 30539971 ~ 30568225 (-) False XLOC_001303
TCONS_00002132 mRNA downstream 150021 30539982 ~ 30568225 (-) True XLOC_001303
TCONS_00002128 mRNA downstream 207289 30443294 ~ 30510957 (-) False XLOC_001302
TCONS_00002138 mRNA upstream 13208 30736449 ~ 30762264 (-) False XLOC_001306
TCONS_00002143 mRNA upstream 254695 30977936 ~ 30979707 (-) True XLOC_001310
TCONS_00002144 mRNA upstream 348467 31071708 ~ 31105376 (-) False XLOC_001311
TCONS_00002145 mRNA upstream 349577 31072818 ~ 31083535 (-) True XLOC_001311
TCONS_00002146 mRNA upstream 411701 31134942 ~ 31350148 (-) False XLOC_001312
TCONS_00002135 other downstream 76710 30618480 ~ 30641536 (-) True XLOC_001304
TCONS_00002134 other downstream 105756 30589243 ~ 30612490 (-) False XLOC_001304
TCONS_00002121 other downstream 473601 30244531 ~ 30244645 (-) True XLOC_001298
TCONS_00002109 other downstream 1533019 29175462 ~ 29185227 (-) True XLOC_001290
TCONS_00002108 other downstream 1542546 29174903 ~ 29175700 (-) False XLOC_001290
TCONS_00002139 other upstream 13329 30736570 ~ 30762254 (-) True XLOC_001306
TCONS_00002165 other upstream 1593094 32316335 ~ 32318911 (-) True XLOC_001321
TCONS_00002166 other upstream 2278318 33001559 ~ 33001673 (-) True XLOC_001323
TCONS_00002172 other upstream 2641942 33365183 ~ 33379968 (-) False XLOC_001325
TCONS_00002186 other upstream 3723367 34446608 ~ 34450574 (-) True XLOC_001331

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU234804 True 678 lncRNA 0.40 3 CI01000049 1421212 ~ 1422939 (-)