RNA id: TCONS_00003429


Basic Information

Item Value
RNA id TCONS_00003429
length 1664
lncRNA type inter_gene
GC content 0.29
exon number 2
gene id XLOC_001307
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 30828356 ~ 30842747 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

aaaagcaacaacagcaaaaaaatctaattgaaaaacttataattaatcaatcaatatgtGAAGACCAGAAGACTATTGCTAATTTTTGTGctaagttttataatgatttgtacacctctaaatttaataaacaaaacgcTTTAGATTTTTTCGAAACATTATCTTGTGTAAAAAAATTGGAGAATGCTGATCAGGCTTTTCTTGAAGCTCCAATCACATTAACAGAAGTTGAAGAagcaattaaatcattaaaacggAATAAATCTCCTGGCACTGATGGTTTCATTTCAGAATTTTACCATATGTTTAGTAAAAATATTGCTCCCTTCTTGTTAAGTGTTTATAAGGAAAGTACAGATAACTCTTTTCTCCCACCTACTTTATGCCAAGGTTTGATTACGCTAATCCCCAAACCAAATAAAGATCGAAATTTATTAGATAATTGGCGTCCAATAACTTTGTTGAACAACGACTACAAAATAATTGCTATAGTTTTAGCTAAAAGATTAAAAGTAATTTTACCTTCTATTATTGATGAAACTCAGTCAGGCTTTATGCCAAATAGACATATATCTAATAACATAAGATTAATTTTAGATATCCTAGACTATTCTGATATGATTGATGGAGacagtttcatattttttttggaTTATTATAAAGCCTTTGACACTTTAGAACATGGTTTTTTATTTCAAGCGCTTAAAGAAATTGGGTTTGGTGTTACTttttgtaaaatgattaaaatgttatataaaaacataaatagctCTATTAAGTTAAGCAGTGGTACTTccccaagattttttttacatcgtGGAGTAAGGCAGGGATGCCCAGTATCaccttatttgtttttaattgcagtACAGTTTCTTAATTTACATATCAAAAGGAGTAATTTAAAAGGAATTACTATTGGAAGTACAGAGTTAATTATAAGTCAACTAGCAGATGatacaacattgtttttaaaagattcatCTCAAGTGGCGGCTGCATTAAATACTCTACAAACATTTTCCAATGCATCTggtttaaatcttaatttaaataaatgtgaattacttCCCATTAAAAATTGTGGTGTTTCCTCAATTTGTGGAGTAGCTGTTAAAAACTCAGTATCTTACCTTGGCATAAATATAACTAACGATAAAAATAGATGTGATGCTAACTTTAATCCAATTGTtgcaaaaactaaaagaaaattgaATAGTTGGCTTCAAAGAGATCTGTCTATTAAAGGAAGAATTTTGCTCACCAAAGCAGAGGGCCTGTCTCGTCTTTCTTATGCAGCTCAATCTCTGTACGTAGATAAGCCTACATGCAAACTAATTGATAAAACTTTAACAGACTTTGTCTGGAAAAATAAATGCCACTATATGAAAAAGACTGTTATAATAAATTCGTATAATAAATGCCACTATATGAAAAAGACTGTTATAATAAATTCGTATAATAAAGGAGGTCTTAACTGTATTGATTTCTGCTCTTCAAATTATACTTTCAAAATTAATTGGCTTAACCAGTATCTACATAAAGAAGACTCAATTTGGAATATTTTCCCAAAACAGGTATTTTCTATTGTTGGAGGCATTAAGTATTTATTGATGTGTAATTATAACATAACCAAAATTCCTGTTAAACTTTCAAATTTCCAT

Function

GO:

id name namespace
GO:0022402 cell cycle process biological_process
GO:0007049 cell cycle biological_process
GO:1903047 mitotic cell cycle process biological_process
GO:0000779 condensed chromosome, centromeric region cellular_component
GO:0000793 condensed chromosome cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0005634 nucleus cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00002124 lncRNA downstream 388518 30439422 ~ 30441060 (-) True XLOC_001301
TCONS_00002122 lncRNA downstream 494749 30333202 ~ 30334829 (-) True XLOC_001299
TCONS_00002112 lncRNA downstream 1170801 29653949 ~ 29658777 (-) True XLOC_001294
TCONS_00002110 lncRNA downstream 1502630 29323374 ~ 29326948 (-) True XLOC_001292
TCONS_00003428 lncRNA downstream 1651270 29176676 ~ 29178308 (-) True XLOC_001291
TCONS_00002142 lncRNA upstream 77921 30919336 ~ 30923141 (-) True XLOC_001309
TCONS_00002149 lncRNA upstream 447121 31288536 ~ 31296246 (-) True XLOC_001313
TCONS_00002152 lncRNA upstream 667363 31508778 ~ 31512164 (-) False XLOC_001315
TCONS_00002155 lncRNA upstream 673226 31514641 ~ 31516081 (-) True XLOC_001315
TCONS_00003430 lncRNA upstream 756903 31598318 ~ 31600848 (-) True XLOC_001317
TCONS_00002138 mRNA downstream 67314 30736449 ~ 30762264 (-) False XLOC_001306
TCONS_00002137 mRNA downstream 106320 30719817 ~ 30723258 (-) True XLOC_001305
TCONS_00002136 mRNA downstream 106337 30718246 ~ 30723241 (-) False XLOC_001305
TCONS_00002133 mRNA downstream 140574 30585140 ~ 30689004 (-) False XLOC_001304
TCONS_00002132 mRNA downstream 261353 30539982 ~ 30568225 (-) True XLOC_001303
TCONS_00002143 mRNA upstream 136521 30977936 ~ 30979707 (-) True XLOC_001310
TCONS_00002144 mRNA upstream 230293 31071708 ~ 31105376 (-) False XLOC_001311
TCONS_00002145 mRNA upstream 231403 31072818 ~ 31083535 (-) True XLOC_001311
TCONS_00002146 mRNA upstream 293527 31134942 ~ 31350148 (-) False XLOC_001312
TCONS_00002147 mRNA upstream 294264 31135679 ~ 31140096 (-) False XLOC_001312
TCONS_00002139 other downstream 67324 30736570 ~ 30762254 (-) True XLOC_001306
TCONS_00002135 other downstream 188042 30618480 ~ 30641536 (-) True XLOC_001304
TCONS_00002134 other downstream 217088 30589243 ~ 30612490 (-) False XLOC_001304
TCONS_00002121 other downstream 584933 30244531 ~ 30244645 (-) True XLOC_001298
TCONS_00002109 other downstream 1644351 29175462 ~ 29185227 (-) True XLOC_001290
TCONS_00002165 other upstream 1474920 32316335 ~ 32318911 (-) True XLOC_001321
TCONS_00002166 other upstream 2160144 33001559 ~ 33001673 (-) True XLOC_001323
TCONS_00002172 other upstream 2523768 33365183 ~ 33379968 (-) False XLOC_001325
TCONS_00002186 other upstream 3605193 34446608 ~ 34450574 (-) True XLOC_001331
TCONS_00002191 other upstream 3826821 34668236 ~ 34668351 (-) True XLOC_001333

Expression Profile

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