RNA id: TCONS_00002166


Basic Information

Item Value
RNA id TCONS_00002166
length 115
RNA type rRNA
GC content 0.57
exon number 1
gene id XLOC_001323
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 33001559 ~ 33001673 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TAgtacagctagctctctgcaactctcacatgatcaTCCACTgaggctaagcagggctgcgcccggtcagtacctggatgggagaccacatgggaaagctaggttgctgcccgag

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000185961

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003433 lncRNA downstream 352830 32591816 ~ 32648729 (-) True XLOC_001322
TCONS_00003432 lncRNA downstream 889689 32109354 ~ 32111870 (-) True XLOC_001320
TCONS_00003431 lncRNA downstream 890077 32109354 ~ 32111482 (-) False XLOC_001320
TCONS_00002160 lncRNA downstream 1144883 31809173 ~ 31856676 (-) False XLOC_001319
TCONS_00002162 lncRNA downstream 1144918 31852993 ~ 31856641 (-) True XLOC_001319
TCONS_00003434 lncRNA upstream 323282 33324955 ~ 33328747 (-) True XLOC_001324
TCONS_00002173 lncRNA upstream 363510 33365183 ~ 33379991 (-) False XLOC_001325
TCONS_00002174 lncRNA upstream 373534 33375207 ~ 33379994 (-) False XLOC_001325
TCONS_00002175 lncRNA upstream 373819 33375492 ~ 33379994 (-) True XLOC_001325
TCONS_00003435 lncRNA upstream 622583 33624256 ~ 33666908 (-) True XLOC_001327
TCONS_00002164 mRNA downstream 889635 32101084 ~ 32111924 (-) False XLOC_001320
TCONS_00002163 mRNA downstream 889677 32097179 ~ 32111882 (-) False XLOC_001320
TCONS_00002161 mRNA downstream 1144937 31809185 ~ 31856622 (-) False XLOC_001319
TCONS_00002157 mRNA downstream 1343705 31654203 ~ 31657854 (-) False XLOC_001318
TCONS_00002167 mRNA upstream 335250 33336923 ~ 33351780 (-) False XLOC_001325
TCONS_00002168 mRNA upstream 335790 33337463 ~ 33353778 (-) False XLOC_001325
TCONS_00002169 mRNA upstream 351501 33353174 ~ 33380340 (-) False XLOC_001325
TCONS_00002170 mRNA upstream 353725 33355398 ~ 33380024 (-) False XLOC_001325
TCONS_00002171 mRNA upstream 354502 33356175 ~ 33380011 (-) False XLOC_001325
TCONS_00002165 other downstream 682648 32316335 ~ 32318911 (-) True XLOC_001321
TCONS_00002139 other downstream 2239305 30736570 ~ 30762254 (-) True XLOC_001306
TCONS_00002135 other downstream 2360023 30618480 ~ 30641536 (-) True XLOC_001304
TCONS_00002134 other downstream 2389069 30589243 ~ 30612490 (-) False XLOC_001304
TCONS_00002121 other downstream 2756914 30244531 ~ 30244645 (-) True XLOC_001298
TCONS_00002172 other upstream 363510 33365183 ~ 33379968 (-) False XLOC_001325
TCONS_00002186 other upstream 1444935 34446608 ~ 34450574 (-) True XLOC_001331
TCONS_00002191 other upstream 1666563 34668236 ~ 34668351 (-) True XLOC_001333
TCONS_00002192 other upstream 1677718 34679391 ~ 34681969 (-) True XLOC_001332
TCONS_00002194 other upstream 1706415 34708088 ~ 34713707 (-) False XLOC_001334

Expression Profile

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