RNA id: TCONS_00003433


Basic Information

Item Value
RNA id TCONS_00003433
length 578
lncRNA type intronic
GC content 0.48
exon number 4
gene id XLOC_001322
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 32591816 ~ 32648729 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGGAAAGGGCGCTCGCATTGATGTCTCCACAGCGTTGGTTTCAGTTTGGATCAGTGTCGAGGCTTGAACAACCATGGCACATATGTGAGTGCACGACAAATCAGCTCTTTCACTCGCCTTGGGCATCAGTGCCATTCGGAGGAGCTTGTTTGCTTATTGTTTGTGCTCTGAGCTGATTGTAATGGGAAGGCGTTAACCAGGGCTGTGTGCGCCGCATGTGTTCTGCTTTGAAGACTCCCCTTTAGGCAATCACCTCAACTTTTCAACCTCCACCCATGCTGTCTttggtatttaaaaaaagAGGACTGAAACCCATTTGGCATTGGTCCCCAGGGCTGTGCCTGTCCTTGCCCTGCTGTGGAGACTCACAAGCCTCTAAGAGACTATATGAACCAACCAGGCCGTTGTGGAGACAGACTGACAAAGACAGAAGTGAATAGGATAAAGACTCAGTCGAGATTGACCCGCTGCAGAGGGGTCTATAAGCACAAACCTACTGTCTGTTAAACGACTGAAAGGGTGATTTGGGAAGGTTTTTAATGTCTTGTTTGATAAAAGACGGACTGTGATTTTTCAGT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003432 lncRNA downstream 479946 32109354 ~ 32111870 (-) True XLOC_001320
TCONS_00003431 lncRNA downstream 480334 32109354 ~ 32111482 (-) False XLOC_001320
TCONS_00002160 lncRNA downstream 735140 31809173 ~ 31856676 (-) False XLOC_001319
TCONS_00002162 lncRNA downstream 735175 31852993 ~ 31856641 (-) True XLOC_001319
TCONS_00002159 lncRNA downstream 735186 31809173 ~ 31856630 (-) False XLOC_001319
TCONS_00003434 lncRNA upstream 676226 33324955 ~ 33328747 (-) True XLOC_001324
TCONS_00002173 lncRNA upstream 716454 33365183 ~ 33379991 (-) False XLOC_001325
TCONS_00002174 lncRNA upstream 726478 33375207 ~ 33379994 (-) False XLOC_001325
TCONS_00002175 lncRNA upstream 726763 33375492 ~ 33379994 (-) True XLOC_001325
TCONS_00003435 lncRNA upstream 975527 33624256 ~ 33666908 (-) True XLOC_001327
TCONS_00002164 mRNA downstream 479892 32101084 ~ 32111924 (-) False XLOC_001320
TCONS_00002163 mRNA downstream 479934 32097179 ~ 32111882 (-) False XLOC_001320
TCONS_00002161 mRNA downstream 735194 31809185 ~ 31856622 (-) False XLOC_001319
TCONS_00002157 mRNA downstream 933962 31654203 ~ 31657854 (-) False XLOC_001318
TCONS_00002158 mRNA downstream 934172 31654264 ~ 31657644 (-) True XLOC_001318
TCONS_00002167 mRNA upstream 688194 33336923 ~ 33351780 (-) False XLOC_001325
TCONS_00002168 mRNA upstream 688734 33337463 ~ 33353778 (-) False XLOC_001325
TCONS_00002169 mRNA upstream 704445 33353174 ~ 33380340 (-) False XLOC_001325
TCONS_00002170 mRNA upstream 706669 33355398 ~ 33380024 (-) False XLOC_001325
TCONS_00002171 mRNA upstream 707446 33356175 ~ 33380011 (-) False XLOC_001325
TCONS_00002165 other downstream 272905 32316335 ~ 32318911 (-) True XLOC_001321
TCONS_00002139 other downstream 1829562 30736570 ~ 30762254 (-) True XLOC_001306
TCONS_00002135 other downstream 1950280 30618480 ~ 30641536 (-) True XLOC_001304
TCONS_00002134 other downstream 1979326 30589243 ~ 30612490 (-) False XLOC_001304
TCONS_00002121 other downstream 2347171 30244531 ~ 30244645 (-) True XLOC_001298
TCONS_00002166 other upstream 352830 33001559 ~ 33001673 (-) True XLOC_001323
TCONS_00002172 other upstream 716454 33365183 ~ 33379968 (-) False XLOC_001325
TCONS_00002186 other upstream 1797879 34446608 ~ 34450574 (-) True XLOC_001331
TCONS_00002191 other upstream 2019507 34668236 ~ 34668351 (-) True XLOC_001333
TCONS_00002192 other upstream 2030662 34679391 ~ 34681969 (-) True XLOC_001332

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU235382 True 393 lncRNA 0.51 2 CI01000049 2386203 ~ 2389249 (-)