RNA id: TCONS_00002159


Basic Information

Item Value
RNA id TCONS_00002159
length 2148
lncRNA type retained_intron
GC content 0.46
exon number 18
gene id XLOC_001319
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 31809173 ~ 31856676 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACAATAACAGTAAAGACTCGCAGCTTCACTTGAAAAGCTACTGTATCGCATTCTGTCTCATTGATATTTCCCGAAGTCACCGCGGTTTACAGCGCTGCTCGTGCACTTGAGCTTTTGTGCTTTTCACGGAAGAATCCTAACTGACAGATTTAATGATGACGACATCATGGAGTGATCGACTTCAGGACTATGCAGACCTCCCGGCAAACATGGACGGCCTGGCGATGAAGAAATACAGGAGAGAGGCCTATCATAGAGTGTTTGTGAACAGAAGTCTGGCCATGGAAAAGATTAAATGCTTTGGCTTTGACATGGATTACACTTTAGCAGTGTACAAATCGCCTGAATATGAGTCTTTGGGCTTTGATCTGACTGTGGAGCGACTGGTGTCCATTGGCTACCCACAGGAACTTCTCGGGTTTGTTTATGATCCGACTTTCCCTACAAGAGGCCTGGTGTTTGACAACATGTATGGCAATCTCCTGAAGGTAGATGCTTACGGAAACATCCTGGTCTGTGTCCATGGCTTTAACTTTCTGCGAGGGCCTGACATCCGAGAACTCTACCCCAACAAGTTTATCCAGCGCGATGACACAGAGCGCTTCTACATCCTCAACACACTCTTTAACCTTCCAGAAACATACCTTTTAGCCTGCCTGGTTGACTTCTTCTCAAACTGTGACCGATATTCCAGGGGGAGAGAGCTTTCCTGTTTGGCTCGGACAACCTCAAACAAGGGAAGACTGTCCCATTTAAACATGTCTGACTGTCGATAAAGTGTGTCAGTGCTGGCGCTCGGCCTCTTACTCTGCTGTCCATTTGTTCTTTCTAAACCTTCAGCTGTGAAACGGGCTTTAAAGATGGAGACCTCTTCATGTCTTTCAAGAGCATGTTCCAAGATGTCCGAGATGCAGTAGACTGGGTTCATTTTAAGggAACACTGAAGGAGAAAACAGTGGAAAACCTGGAGAAGTACGTTGTAAAGGATGCAAAGTTGCCATTGCTGCTGAGCCGTATGAATGAAGTCTCCAAAGTCTTCTTAGCCACCAACAGTGACTACAAGTACACACATAAAATTATGACATACTTGTTTGACTTCCCCCATGGCCCAAAGCATGGCACTCCACATCGTCCATGGCAGTCGTACTTCGACCTCATCCTAGTGGATGCCCGAAAGCCTTTATTTTTTGGAGAGGGAACGGTTCTGAGACAGGTGGATACGACCACAGGGCGGCTGAAGATAGGGACGTACACTGGACCTTTACAACATGGCATTGTATACTCTGGAGGTTCTTCTGATATTGTGTGTGATCTGCTCGGAGCAAAAGGAAAGGATATTTTGTACATTGGGGATCATATTTTTGGAGATATCCTGAAGTCCAAGAAGCGACAGGGTTGGCGAACGTTCCTGGTGATTCCTGAATTGGCTCAGGAGCTGCATGTGTGGACTGATAAAAGCTCTCTGTTCGAGGAACTTCAGGGTTTGGACATTTTCTTGGCAGAACTATACAAGCATTTGGACAGTAGCAGCAATGAGAGGCCAGATATCAGTGCCATCCAGAGAAGAATGAagAAAGTGACACATGACATGGACATGTGTTATGGAATGATGGGAAGTCTGTTTCGCAGTGGTTCTCGGCAGACTCTGTTTGCGTCTCAGGTGATGCGTTACGCTGATCTCTACGCTGCATCATTCATCAACCTGCTCTACTACCCTTTCAGCTACCTGTTTAGAGCCGCTCATGTGCTgATGCCCCATGAGTCCACAGTAGAACACGCTCATGTAGAGACCGACACAGAGTCTCCTCTGGCCACACGTAACCGCCACTGTGTGGACTGCAAAGACATCGACTGCAAAAGAAACCAGCTCACACGCTCCATCAGCGAAATCAAACCACCGCATCTGTTCGCTCAACCACCACAGGAAATCACACACTGCCACGATGAAGACGAtgatgaagaagaagaggaagaggaggaggagtagACGGTTTTGACCATTTGAAGGGTAAAACACGCTGGATGATAAGGAGGAGGAAATGGATGAGTTGATGTATGAAGCTGAAAACAAGTGCAGTTCACCCTAACTGACGGTTTCCTGTTAAAGATGACTAAAGAAATGAACaaaggtttgtttaaaaaaaaaca

Function

GO:

id name namespace
GO:0005575 cellular_component cellular_component
GO:0046872 metal ion binding molecular_function
GO:0008253 5'-nucleotidase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-061013-522 Predicted to enable 5'-nucleotidase activity. Human ortholog(s) of this gene implicated in hereditary spastic paraplegia 45. Orthologous to human NT5C2 (5'-nucleotidase, cytosolic II).

Ensembl:

ensembl_id ENSDART00000152232

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003430 lncRNA downstream 208325 31598318 ~ 31600848 (-) True XLOC_001317
TCONS_00002155 lncRNA downstream 293092 31514641 ~ 31516081 (-) True XLOC_001315
TCONS_00002152 lncRNA downstream 297009 31508778 ~ 31512164 (-) False XLOC_001315
TCONS_00002149 lncRNA downstream 512927 31288536 ~ 31296246 (-) True XLOC_001313
TCONS_00002142 lncRNA downstream 886032 30919336 ~ 30923141 (-) True XLOC_001309
TCONS_00003431 lncRNA upstream 252724 32109354 ~ 32111482 (-) False XLOC_001320
TCONS_00003432 lncRNA upstream 252724 32109354 ~ 32111870 (-) True XLOC_001320
TCONS_00003433 lncRNA upstream 735186 32591816 ~ 32648729 (-) True XLOC_001322
TCONS_00003434 lncRNA upstream 1468325 33324955 ~ 33328747 (-) True XLOC_001324
TCONS_00002173 lncRNA upstream 1508553 33365183 ~ 33379991 (-) False XLOC_001325
TCONS_00002157 mRNA downstream 151319 31654203 ~ 31657854 (-) False XLOC_001318
TCONS_00002158 mRNA downstream 151529 31654264 ~ 31657644 (-) True XLOC_001318
TCONS_00002156 mRNA downstream 275084 31531990 ~ 31534089 (-) True XLOC_001316
TCONS_00002151 mRNA downstream 293061 31508739 ~ 31516112 (-) False XLOC_001315
TCONS_00002154 mRNA downstream 293082 31509530 ~ 31516091 (-) False XLOC_001315
TCONS_00002163 mRNA upstream 240549 32097179 ~ 32111882 (-) False XLOC_001320
TCONS_00002164 mRNA upstream 244454 32101084 ~ 32111924 (-) False XLOC_001320
TCONS_00002167 mRNA upstream 1480293 33336923 ~ 33351780 (-) False XLOC_001325
TCONS_00002168 mRNA upstream 1480833 33337463 ~ 33353778 (-) False XLOC_001325
TCONS_00002169 mRNA upstream 1496544 33353174 ~ 33380340 (-) False XLOC_001325
TCONS_00002139 other downstream 1046919 30736570 ~ 30762254 (-) True XLOC_001306
TCONS_00002135 other downstream 1167637 30618480 ~ 30641536 (-) True XLOC_001304
TCONS_00002134 other downstream 1196683 30589243 ~ 30612490 (-) False XLOC_001304
TCONS_00002121 other downstream 1564528 30244531 ~ 30244645 (-) True XLOC_001298
TCONS_00002109 other downstream 2623946 29175462 ~ 29185227 (-) True XLOC_001290
TCONS_00002165 other upstream 459705 32316335 ~ 32318911 (-) True XLOC_001321
TCONS_00002166 other upstream 1144929 33001559 ~ 33001673 (-) True XLOC_001323
TCONS_00002172 other upstream 1508553 33365183 ~ 33379968 (-) False XLOC_001325
TCONS_00002186 other upstream 2589978 34446608 ~ 34450574 (-) True XLOC_001331
TCONS_00002191 other upstream 2811606 34668236 ~ 34668351 (-) True XLOC_001333

Expression Profile

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