RNA id: TCONS_00002155


Basic Information

Item Value
RNA id TCONS_00002155
length 598
lncRNA type retained_intron
GC content 0.38
exon number 2
gene id XLOC_001315
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 31508739 ~ 31516112 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

atttttgttttgaatgtaCGCTGTTTGATCTGAAGCTGTGGTCAAGCATTAGCTTAAATATAAGTATGGTGAGTACTAGTACGACTAGCTAAACGCTGTTTACAACATGAAAGCACAAGTAGCTTTTGCAAGTGAGAAACAAACGCGTTTGCACTTTACAGGATTGTTTCGCTTATGATCATTTGAAATCGCTGGTTAGTTAGCTGCACGGCTAACGAGTTTACGCCGTTGTCTGGAGTAGATACGCGCGTTTACTCGCCTATTTGTTTAAcaatttgtttgttgttgttattttcattTAGTGTTCTTTTGTTTTATATCAATAACATTTGTAGACCCCTGGTCTACCTAAGCAAATAGAGATGGAGAAGGAGGTTCAGACTTCAGAGGACacaggctgtatgagtgctgcaAAAGCTGTGTTGTTGGATGAGTGTGAGGAGCAGTTCGGGCTGCTACAGAAGCTTCAAAATGAGATAATAATGGCAGACACGGAGGCTTATGATGATCAGTCAAATGAGGTTTGTCCTTCTTTTtagtacttttaaataaatagtttgaatggGTCTGTGTatcttgtattttctttttttttgtg

Function

GO:

id name namespace
GO:0000070 mitotic sister chromatid segregation biological_process
GO:0051382 kinetochore assembly biological_process
GO:0000941 condensed nuclear chromosome inner kinetochore cellular_component
GO:0005634 nucleus cellular_component

KEGG:

id description
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-090313-204 Predicted to be involved in mitotic sister chromatid segregation. Predicted to act upstream of or within kinetochore assembly. Predicted to be located in chromosome, centromeric region and nucleus. Orthologous to human CENPK (centromere protein K).

Ensembl:

ensembl_id ENSDART00000146891

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00002152 lncRNA downstream 2477 31508778 ~ 31512164 (-) False XLOC_001315
TCONS_00002149 lncRNA downstream 218395 31288536 ~ 31296246 (-) True XLOC_001313
TCONS_00002142 lncRNA downstream 591500 30919336 ~ 30923141 (-) True XLOC_001309
TCONS_00002959 lncRNA downstream 635795 30838563 ~ 30878846 (-) True XLOC_001308
TCONS_00002141 lncRNA downstream 673226 30840216 ~ 30841415 (-) True XLOC_001307
TCONS_00003430 lncRNA upstream 82237 31598318 ~ 31600848 (-) True XLOC_001317
TCONS_00002159 lncRNA upstream 293092 31809173 ~ 31856630 (-) False XLOC_001319
TCONS_00002160 lncRNA upstream 293092 31809173 ~ 31856676 (-) False XLOC_001319
TCONS_00002162 lncRNA upstream 336912 31852993 ~ 31856641 (-) True XLOC_001319
TCONS_00003431 lncRNA upstream 593273 32109354 ~ 32111482 (-) False XLOC_001320
TCONS_00002150 mRNA downstream 9497 31374751 ~ 31505144 (-) True XLOC_001314
TCONS_00002146 mRNA downstream 164493 31134942 ~ 31350148 (-) False XLOC_001312
TCONS_00002148 mRNA downstream 343399 31166179 ~ 31171242 (-) True XLOC_001312
TCONS_00002147 mRNA downstream 374545 31135679 ~ 31140096 (-) False XLOC_001312
TCONS_00002145 mRNA downstream 431106 31072818 ~ 31083535 (-) True XLOC_001311
TCONS_00002156 mRNA upstream 15909 31531990 ~ 31534089 (-) True XLOC_001316
TCONS_00002157 mRNA upstream 138122 31654203 ~ 31657854 (-) False XLOC_001318
TCONS_00002158 mRNA upstream 138183 31654264 ~ 31657644 (-) True XLOC_001318
TCONS_00002161 mRNA upstream 293104 31809185 ~ 31856622 (-) False XLOC_001319
TCONS_00002163 mRNA upstream 581098 32097179 ~ 32111882 (-) False XLOC_001320
TCONS_00002139 other downstream 752387 30736570 ~ 30762254 (-) True XLOC_001306
TCONS_00002135 other downstream 873105 30618480 ~ 30641536 (-) True XLOC_001304
TCONS_00002134 other downstream 902151 30589243 ~ 30612490 (-) False XLOC_001304
TCONS_00002121 other downstream 1269996 30244531 ~ 30244645 (-) True XLOC_001298
TCONS_00002109 other downstream 2329414 29175462 ~ 29185227 (-) True XLOC_001290
TCONS_00002165 other upstream 800254 32316335 ~ 32318911 (-) True XLOC_001321
TCONS_00002166 other upstream 1485478 33001559 ~ 33001673 (-) True XLOC_001323
TCONS_00002172 other upstream 1849102 33365183 ~ 33379968 (-) False XLOC_001325
TCONS_00002186 other upstream 2930527 34446608 ~ 34450574 (-) True XLOC_001331
TCONS_00002191 other upstream 3152155 34668236 ~ 34668351 (-) True XLOC_001333

Expression Profile

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