RNA id: TCONS_00002145


Basic Information

Item Value
RNA id TCONS_00002145
length 629
RNA type mRNA
GC content 0.50
exon number 5
gene id XLOC_001311
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 31071708 ~ 31105376 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCAAAAAACGGGAGAGCATCACACTCCGAGGATCTGTAGGGAGCAGGGGATCAGGAGAATTACTGGATGAGTCGAGCTGCAATGTTTCCCCCTCTGGCTCCGTCTCTTCCATCCCTTCCTGTATGCCGTTCTCCTGGTTTGGGGACAGAGACAAGGaaaaagatagagagagagaaaaagagcgtTCCGCATCCAGTGGCAGTCTGCCTCGCTCGCCTTCAGAAGGATACATAGAGGATCATACAAACAAGAGCTTATCTGTGACGGGTGATTCAGTCGCAGGTAGTCCTCGTTCTCTGTTGGCAGGGTTTCTGAGAGAGCCCCATGTCCTTgggcgctcacacacacacaccttctccTCGTGTGAGACTCTTGATGATGTCTCCACTCCAGCAGCAAAGCAATACATGTGGCAGAACCGCCCTCTTTCAGAGTGGACCAATCAGCAAGTTTGCCACTGGTTGATGGGCATGAACATGGAACAGTATATAGCCGAGTTTACAGCTAAAGGCGTGGATGGCCAGCATCTCTTGAGCATGGACAGCAGTAAACTTAAGGAACTTGGTGTTTCTAGCCAAAGAGATCGTGCTACCATCAAGAGGAGACTAAAGGACATGAAGAAAGCTCAG

Function

GO:

id name namespace
GO:0007015 actin filament organization biological_process
GO:0019722 calcium-mediated signaling biological_process
GO:0031175 neuron projection development biological_process
GO:0030425 dendrite cellular_component
GO:0015629 actin cytoskeleton cellular_component
GO:0014069 postsynaptic density cellular_component
GO:0005737 cytoplasm cellular_component
GO:0051015 actin filament binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-090312-99 Predicted to enable actin filament binding activity. Predicted to be involved in actin filament organization; calcium-mediated signaling; and neuron projection development. Predicted to act upstream of or within nervous system development. Predicted to be active in several cellular components, including actin cytoskeleton; dendrite; and postsynaptic density.

Ensembl:

ensembl_id ENSDART00000138113

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00002142 lncRNA downstream 149677 30919336 ~ 30923141 (-) True XLOC_001309
TCONS_00002959 lncRNA downstream 193972 30838563 ~ 30878846 (-) True XLOC_001308
TCONS_00003429 lncRNA downstream 231403 30829578 ~ 30841415 (-) False XLOC_001307
TCONS_00002149 lncRNA upstream 205001 31288536 ~ 31296246 (-) True XLOC_001313
TCONS_00002152 lncRNA upstream 425243 31508778 ~ 31512164 (-) False XLOC_001315
TCONS_00002155 lncRNA upstream 431106 31514641 ~ 31516081 (-) True XLOC_001315
TCONS_00003430 lncRNA upstream 514783 31598318 ~ 31600848 (-) True XLOC_001317
TCONS_00002159 lncRNA upstream 725638 31809173 ~ 31856630 (-) False XLOC_001319
TCONS_00002143 mRNA downstream 93111 30977936 ~ 30979707 (-) True XLOC_001310
TCONS_00002138 mRNA downstream 310554 30736449 ~ 30762264 (-) False XLOC_001306
TCONS_00002137 mRNA downstream 349560 30719817 ~ 30723258 (-) True XLOC_001305
TCONS_00002136 mRNA downstream 349577 30718246 ~ 30723241 (-) False XLOC_001305
TCONS_00002133 mRNA downstream 383814 30585140 ~ 30689004 (-) False XLOC_001304
TCONS_00002146 mRNA upstream 51407 31134942 ~ 31350148 (-) False XLOC_001312
TCONS_00002147 mRNA upstream 52144 31135679 ~ 31140096 (-) False XLOC_001312
TCONS_00002148 mRNA upstream 82644 31166179 ~ 31171242 (-) True XLOC_001312
TCONS_00002150 mRNA upstream 291216 31374751 ~ 31505144 (-) True XLOC_001314
TCONS_00002151 mRNA upstream 425204 31508739 ~ 31516112 (-) False XLOC_001315
TCONS_00002139 other downstream 310564 30736570 ~ 30762254 (-) True XLOC_001306
TCONS_00002135 other downstream 431282 30618480 ~ 30641536 (-) True XLOC_001304
TCONS_00002134 other downstream 460328 30589243 ~ 30612490 (-) False XLOC_001304
TCONS_00002121 other downstream 828173 30244531 ~ 30244645 (-) True XLOC_001298
TCONS_00002109 other downstream 1887591 29175462 ~ 29185227 (-) True XLOC_001290
TCONS_00002165 other upstream 1232800 32316335 ~ 32318911 (-) True XLOC_001321
TCONS_00002166 other upstream 1918024 33001559 ~ 33001673 (-) True XLOC_001323
TCONS_00002172 other upstream 2281648 33365183 ~ 33379968 (-) False XLOC_001325
TCONS_00002186 other upstream 3363073 34446608 ~ 34450574 (-) True XLOC_001331
TCONS_00002191 other upstream 3584701 34668236 ~ 34668351 (-) True XLOC_001333

Expression Profile

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