XLOC_001310 (dlx2b)


Basic Information

Item Value
gene id XLOC_001310
gene name dlx2b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 30977936 ~ 30979707 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00002143
CCTCCATCAACTATGGATATGTGACTcaaggcaaaacaaactacctCTAGAAGTTGTGTGATTTTGAATCAACTATTAACTGTTAGGAAGTACAGCAATATATTTTAGAAGTGATCACGTTGAGTAGTCTCTTCTTCCTGCGAAATGACCGCTGTTCTGGATAGCCTTGGCTCGGATATGCATACAAACCATATTACCTCGAGCAGCTTCAGCACCGTTCACAAGTCACAGGATTCTCCAACACTGCCGGTGTCAACGGTGACCGACAGCAGCTTCTTCAGCAGTTCACAGACAGGTCACTGTGCAGGGACAGCGTACGCACAACTGGCATCATATTCCTATCATCCTGGCACGGTGGGTAATGTTCATTACAGCCCCAAAGCGTACGATTTAGGCTATGCTTCCTCCTATGGCGCTTATGGAACGTATGGAGCCAGCTCTTCACCCACACCAACTGAACCGGAAAAAGAAGAGAGTGAACCGGAGGTGCGCATGGTGAATGGAAAGCCAAAAAAAGTACGGAAACCGCGAACCATCTACTCCAGTTTTCAGCTGGCGGCTCTCCAGCGCAGATTCCAGAAGACCCAGTACCTCGCGCTTCCAGAGCGCGCCGAACTGGCGGCGTCTTTGGGGCTCACGCAGACCCAGGTGAAGATATGGTTCCAGAACAGACGCTCAAAATTCAAAAAGTTGTGGAAAAATGGCGAGATTCCTGCAGACCAGCAGGTTGCTTCCGGTGACTCTCCTTCCAGCTCTCCACCGCCACAAGCAGGTTGGGATTTCCCACCGAACCCAACACAGAACGACGGGGACACAGTTTCAGAGCAGCCCACTGGGCCGCCAAACACCACTGCCCCATCGTTCTTAACAAACTATTCCTGGTACTCATCTACAAATGCGGTTACACATCTACAACCCAGTACCTTAATACAACCTCATCACAGCTCTGCAATGAGTACAGGGACCATATTCTAACAGAGGACTAAAATGGCCGAATACACCTGTTGTAGGAGGATATAATAGGCCTATTGTCACTGGACTTGTATTTTAGGAGAACATTAACTTCAAAATCTATTTTCAGGCTGGGTTTGTTAAAGATGATTGCCGTGGAATTCTTTGGCGCGACTAATGCGCTCGAGCAACgcacattaaattatttttctatttatttatttgttttagtccAGTTGAAAATGGTAATCAGATACTTTTAATTCACATTCCAAGTACAAACGGGTAGCCTTTTTGAGTGTTGTACAGAAATGATTAGGTTTAGtaataaatctattaaaatgcTTGCAATCTGCAGTAATAATTAAATGTGCGTTTTACTCAGTTAAGGTTTCATTATTTGGTtgtcatttaaagtattttatattgCCATATGTTTGTGCTGTAAAGCAAATCTAGATCTTACTGGATCATAAAAGTCCCATAAAGGATCCTTTTAAGCTGACATCAACgattttttaataaacacttgAAATTATCCTTCGATAATATTAGATGGATACTCAGTAA

Function

symbol description
dlx2b Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in cell differentiation and negative regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Is expressed in several structures, including dental epithelium; dental mesenchyme; forebrain; parasphenoid; and splanchnocranium. Orthologous to human DLX2 (distal-less homeobox 2).

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0030154 cell differentiation biological_process
GO:0007275 multicellular organism development biological_process
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0009790 embryo development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-980526-18 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in cell differentiation and negative regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Is expressed in several structures, including dental epithelium; dental mesenchyme; forebrain; parasphenoid; and splanchnocranium. Orthologous to human DLX2 (distal-less homeobox 2).

Ensembl:

ensembl_id ENSDARG00000017174

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00002143 True 1521 mRNA 0.44 3 30977936 30979707

Neighbor

gene id symbol gene type direction distance location
XLOC_001309 BX548015.1 coding downstream 54795 30919336 ~ 30923141 (-)
XLOC_001308 NA coding downstream 99090 30838563 ~ 30878846 (-)
XLOC_001307 NA coding downstream 135189 30828356 ~ 30842747 (-)
XLOC_001306 dis3 coding downstream 215672 30736449 ~ 30762264 (-)
XLOC_001305 MZT1 coding downstream 254678 30718246 ~ 30723258 (-)
XLOC_001311 ppp1r9alb coding upstream 92001 31071708 ~ 31105376 (-)
XLOC_001312 kcnq5b coding upstream 155235 31134942 ~ 31350148 (-)
XLOC_001313 BX284697.2 coding upstream 308829 31288536 ~ 31296246 (-)
XLOC_001314 rims1b coding upstream 395044 31374751 ~ 31505144 (-)
XLOC_001315 cenpk coding upstream 529032 31508739 ~ 31516112 (-)
XLOC_001301 CR382370.2 non-coding downstream 536876 30439422 ~ 30441060 (-)
XLOC_001299 CR382370.1 non-coding downstream 643107 30333202 ~ 30334829 (-)
XLOC_001317 NA non-coding upstream 618611 31598318 ~ 31600848 (-)
XLOC_001321 CR925879.1 non-coding upstream 1336628 32316335 ~ 32318911 (-)
XLOC_001322 NA non-coding upstream 1612109 32591816 ~ 32648729 (-)
XLOC_001323 CU929192.1 non-coding upstream 2021852 33001559 ~ 33001673 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000049_01464880_01465976 DLX2B coding CI01000049 null 1464555 ~ 1467260 (-)