CI01000049_01464880_01465976 (DLX2B)


Basic Information

Item Value
gene id CI01000049_01464880_01465976
gene name DLX2B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000049
NCBI id null
chromosome length 9665442
location 1464555 ~ 1467260 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000049_01464880_01465976.mRNA
AATTCTTCATCCTTCAAAATAGAATTTCTAATCAAATCGAGTGACGGCACTTATACGATTTTATTAGCTATTTACAGGCAATATGCTATCATAGCCTATAGCTAATAATTTGAATTTAAAATGTTCTAAAAATCTAACAAAATCCTGTTTTAAATCGCACCACACCAGAGACAAGTCACCTGGGGATTACAGCTGGCAAAGCTTAGGCCACAAAGTTTGTTGAGTTGACAGAATACTTAGTAAATTGCCAGTTCTCGTGACTGAGGTAGTTTTCTATGTAGGTCTATGTACGAGGCGTTTGGCGCGACAGAGCATCATATAGGGCTGGTTCCGCGCTTTATCCCTGGTGTTTACCGGGCAATAATTGCTGTTTTGCGCACCTGTGGGTGTGAGTAGACTGGCGCCGTCTGTGATTAGTCAGTGGAATGCAGACTGCTTCCGTAAGATACACTGACAACATTTCAACGATAGATGGCATTCCAGTTAAACCGTGCTTCTCAACAATGGGGAAATATATCCCTTTAATCAAGACTGTAAGCTTCATTCGATACTTTTAGACCATTAGCATGTCTAAATGTAGGCCATTGATCGAGTAGGCCTAATTTACATGCGCACTGCTCCACGTGCCAGGTTAACGGTTAAGACATCTTAACAAGGTTGCCTATAAACAAAAAAACTTAAATCATAAATTAGCGGCGCAAAAATGAAAAGAACGTAATTTTTATGTCTTTAACACTTTAGAGGAAGCAAACCACCTGTGCATTGAAGGGCTAGTTTGTTTACATCTAAAAAAATAAAATAAAATAAAATAAAATAAAATAAAAAATGATATAGCCTAGTCCTGTCTTCTCTCTCCTTATTTTCTGTCTCTTTTTGAAATTGTTTTAGGCCTATTGAATTTATTTATCAGATGAATAGTTTTTTATTTATTTATTTATTTTTCCAATTCTAAAGAAAAGACATTTAAGACCAAGTCTGCAAGATATTTTGTTATTTCGACTTGTCAAAGGTCTTCCTTCAGCTGGCAGTACTGCCTGCGAAGCGATTGGTTCGCTTTACCACATGACGCCCAGTATATGGCCCGCCCGTCAGCATCTCCAAGGCAGAGACCGCCGCGGAGCTCAAACCCTCTATCAACTATGGATATGTGACTTAAGGCAAAACGAACTACCTCTATAAGTTCTGTGATTTTTGAGTCACCGATTAATTGTTAGAGGTAGCCTACAGAATTTGAAAATTTTAAGTGGTCACGGTAAGTAAATTCAGTTTACTTTTCCCTGCAAAATGACCGCTGTTCTGGATAGCCTTGGCTCGGATATGCATACAAACCATATTACCTCGAGCAGCTTCAGTACCGTTCACAAGTCGCAGGATTCCCCAACACTGCCGGTGTCAACTGTGACCGACAGCAGCTTCTACAGTAGTTCACAGACAGGACACTGCACAGGGACGGCGTACGCACAACTGGCATCTTATTCCTATCATCCTGGTACAGTGGGTAATGTTCACTACAGCCCAAAAGCTTACGACTTAGGCTATGCTTCTTCGTATGGCGCTTATGGAACGTATGGACCCAGTTCTTCACCCACACCAACCGAACCGGAGAAGGAAGAGAGTGAACCGGAGGTGCGCATGGTGAATGGAAAGCCAAAGAAAGTCCGGAAACCGCGAACCATCTACTCCAGTTTTCAGCTGGCGGCTCTCCAGCGCAGATTCCAAAAGACCCAGTATCTCGCGCTCCCAGAACGCGCCGAACTGGCGGCGTCTTTGGGCCTCACACAGACCCAGGTGAAGATATGGTTTCAGAACCGACGCTCAAAATTCAAAAAGTTGTGGAAAAACGGCGAGATTCCAGCAGACCAGCAGGTTGCTTCCTGTGACTCTCCATCTAGCACTCCTCCACCACAGGCAGGTTGGGATTTCCCTCCGAACCAGACACCGAACGACGGGGACACAGTTTCAGAGCAGCCCACAGGGCCACCAAACACCACTGCCCCATCGTTCTTGACAAACTATTCATGGTACTCATCCACGAATACGGTTACACATCTACAGCCCAGTACCTTAATACAACCTCATCACAGCTCTGCAATGAGTGCAGGGACCATATTCTAACAGAGGACTAAAATGGCCGAATACACCTGTTGTAGGAGGAAATAATAGGCCTATCTTGTCACTGGACTTGTACTTTAGGAGAACATTAACTTTAAAATCTATTTTCAGGCTGGGTTTGCTAAAGATGTTTGCTGTGGAATTCTTTGGCGCGACTAATGCGCTCGAGCAACGCACATTAAATTATTTTTCTATTTATTTATTTGTTTTCATTATAGTAAAATTGAAAGGGATAATCAGATATGTTTATTTCACATTCCAAGTACAAACGGGTAGCCTTTTTTCGTGTGTTGTACAGAATTTTAGGTTTAGTGATAAATCTATTAAA

Function

symbol description
dlx2b Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in cell differentiation and negative regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Is expressed in several structures, including dental epithelium; dental mesenchyme; forebrain; parasphenoid; and splanchnocranium. Orthologous to human DLX2 (distal-less homeobox 2).

NR:

description
Dlx2a protein

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000049_01464880_01465976.mRNA True 2440 mRNA 0.42 3 1464555 1467260

Neighbor

gene id symbol gene type direction distance location
CI01000049_01430548_01446088 DIS3 coding downstream 18363 1429996 ~ 1446192 (-)
CI01000049_01340906_01399870 DACH1, DACHC coding downstream 64685 1340906 ~ 1399870 (-)
CI01000049_01302622_01311542 UBAC2 coding downstream 152855 1302611 ~ 1311700 (-)
CI01000049_01247902_01262425 IGF2BP2, IGF2BP2B coding downstream 202130 1247460 ~ 1262425 (-)
CI01000049_01197359_01206811 NA coding downstream 257360 1195678 ~ 1207195 (-)
CI01000049_01515304_01535924 NA coding upstream 47548 1514808 ~ 1536149 (-)
CI01000049_01549129_01580150 KCNQ5B coding upstream 81180 1548440 ~ 1580150 (-)
CI01000049_01678202_01768140 NA coding upstream 210942 1678202 ~ 1768140 (-)
CI01000049_01773383_01778313 CENPK coding upstream 305508 1772768 ~ 1778809 (-)
CI01000049_01782181_01783289 LBX1B coding upstream 314476 1781736 ~ 1784055 (-)
G206907 NA non-coding downstream 41616 1421212 ~ 1422939 (-)
G207162 NA non-coding downstream 54408 1409777 ~ 1410147 (-)
G207159 NA non-coding downstream 61793 1402498 ~ 1402762 (-)
G207158 NA non-coding downstream 62893 1401427 ~ 1401662 (-)
G207156 NA non-coding downstream 134780 1329570 ~ 1329775 (-)
G207181 NA non-coding upstream 15698 1482958 ~ 1483190 (-)
G207186 NA non-coding upstream 16567 1483827 ~ 1511946 (-)
G207188 NA non-coding upstream 143726 1610986 ~ 1624316 (-)
G207187 NA non-coding upstream 171399 1638659 ~ 1657288 (-)
G207228 NA non-coding upstream 324748 1792008 ~ 1792326 (-)
G206938 NA other downstream 636910 825859 ~ 827645 (-)
G206850 NA other downstream 831360 632680 ~ 633195 (-)
G206849 NA other downstream 832979 631143 ~ 631576 (-)
G207278 NA other upstream 519751 1987011 ~ 1988767 (-)
G209491 NA other upstream 4560829 6028089 ~ 6028469 (-)
CI01000049_08056071_08059039 TIMM10.S, TIMM10, TIMM10.L other upstream 6588373 8055633 ~ 8059179 (-)
CI01000049_08452153_08453389 CISD2 other upstream 6983882 8451142 ~ 8454233 (-)
G211175 NA other upstream 6998033 8465293 ~ 8476265 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_001310 dlx2b coding NC_007112.7 CM002885.2 30977936 ~ 30979707 (-)