RNA id: TCONS_00002170


Basic Information

Item Value
RNA id TCONS_00002170
length 1819
RNA type mRNA
GC content 0.36
exon number 15
gene id XLOC_001325
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 33336923 ~ 33380340 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTTCCTGCACATCATCTGTAATTAAACTACGCAAAGCGCTGAACTGCTGAATAGCAATTGGAGCTCGCTTGGGTCACTCAAAGGGCATGATGAATTCATACACGTGGATTTTACTTCTGCTGGCAGGTCTCGCAGCAACCAAAGCGCAAGAATTGGACCTAAGCGATGCctttggtgatgatgatgatgagatcCCCACAGAGAAGCCAAAAGAGAAACCACCCCCACCCAAAAATGCAGATCCAGGATTTGATTTATCAGATGCTTTTGAATCAGACCCCAAAAAACCTGCTGTTGTTCCCCCAAAATCAGTGGAtgATAAAAAGAAACCAGCATCTGGAGGTGAGCTGGATCTATCTGATGCGTTTGGTCCAGATACAGAGACCAAAAAACCTATGGTCCCACCTAAAGAAAGAGAAACTGGTGGTAGATCTTTTGATGACAATGATCTTATTGATGTCAGTGAGCGAGGTGGATATAAACCCGATGGAGGCGGCAGTAGagggcgaGGAGGAGCCCCTTCTTCTGATGATCAAAGtggTGGAGCTGAGCAACCTCaagGCGGAGCTCTGGCTGCCATCATCAGTTCTGTAGGAGTTGCTGTTCTCGGGGCTGCCTCCAGTTACTTTGCGTATCAGAAAAAGAAACTTTGTTTTAAAGTGCAAGGAGGGGAAGATCCAGAGAGTGGCAAAAGCCATGGTACTAATTCCGAGCCACAAGTTCTCAGTAACCTGCTCCGTTCATCATAACTGATGCTGGATCTGAGCACTGAAAGAATATATGCACTAAGCATGTACAGATATGGAGAGCCTAACCCTATGGGAAACATCTGTTTTGTAAAATGCTGGGCTTAGTGTAAGTGTAAAAACAttagtgtctttttttttttttttttttttttgggatgctTTACAATTTATGTTGTACTACCTTTAagaatgtgtttttctttttttattaaattttttggatTTAACATTTCTGTAACACTCTACGATATTTGACACTTTATAAAtgctaatgtatttactaacatgaacaaacaatgaacaatattattcatatttgttaacgttgaataataaaagtacaattgtttaatgttagttcatgttaactcacggcacatcaactaatgttaacaagcacagcaTTTAGATTTTAATGAATTGTttatcattagttcatgttagtaaatatctAACTTCATGTGCACCAGATTGCAAAGTGTTACCAACGTTTTCTCTTGACTAATTAATCTTTGGAGGATGTAGAGTTCTGTCACTAAACTGCTTTTAATGCTGTTTTGCTTTAAAATAGTTCCATTGTAAGAAACTCCACTTTACACTGACAAAGTTGTTACTATTTTTGTAGATGTATACAGCAAGTTTCATGAGGGACTTGCTTTTGTTAAGTGCAAGCTGTCTATACAGATGAATACAAAAGTTATCCTTTTGTTCATTCTTACACAATATGTTTGTATTGAAGCGTTTTTAACATTTAGATAGAAATCTATAATAATGCTGATGAGAACCTCActgatctttttaaaaaatgtcaattaaaagaTAAAACAATCATGAGTACATTTAAAATTGTGGAATGCaagttaattttgtttttgcatgttctttatttaaatgtatttaaaattcaATGTATTCATTCATAAATACTGCTTCAGAAACATACAAATTTAAGAATGCCCATTTTCATGTTATTATATCATTGAAATTCTTGTTTTATTGtctgtgtgtgcttttgtttttaacatacaCTTGCTGTTACTTCCTTTAATAAAGCCACTGCCATtcctaaa

Function

GO:

id name namespace
GO:0016740 transferase activity molecular_function
GO:0016757 transferase activity, transferring glycosyl groups molecular_function

KEGG:

id description
ko00500 Starch and sucrose metabolism
ko01003 Glycosyltransferases

ZFIN:

id description
ZDB-GENE-061103-391 Predicted to be involved in T cell extravasation; homotypic cell-cell adhesion; and positive regulation of neutrophil extravasation. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in posterior lateral line primordium. Orthologous to human CD99 (CD99 molecule (Xg blood group)).

Ensembl:

ensembl_id ENSDART00000136383

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003434 lncRNA downstream 26651 33324955 ~ 33328747 (-) True XLOC_001324
TCONS_00003433 lncRNA downstream 706669 32591816 ~ 32648729 (-) True XLOC_001322
TCONS_00003432 lncRNA downstream 1243528 32109354 ~ 32111870 (-) True XLOC_001320
TCONS_00003431 lncRNA downstream 1243916 32109354 ~ 32111482 (-) False XLOC_001320
TCONS_00002162 lncRNA downstream 1498757 31852993 ~ 31856641 (-) True XLOC_001319
TCONS_00003435 lncRNA upstream 244232 33624256 ~ 33666908 (-) True XLOC_001327
TCONS_00002960 lncRNA upstream 325073 33705097 ~ 33709339 (-) False XLOC_001329
TCONS_00002961 lncRNA upstream 327750 33707774 ~ 33709325 (-) True XLOC_001329
TCONS_00002184 lncRNA upstream 996385 34376409 ~ 34381438 (-) False XLOC_001331
TCONS_00002198 lncRNA upstream 1331057 34711081 ~ 34713710 (-) False XLOC_001334
TCONS_00002168 mRNA downstream 1620 33337463 ~ 33353778 (-) False XLOC_001325
TCONS_00002167 mRNA downstream 3618 33336923 ~ 33351780 (-) False XLOC_001325
TCONS_00002164 mRNA downstream 1243474 32101084 ~ 32111924 (-) False XLOC_001320
TCONS_00002163 mRNA downstream 1243516 32097179 ~ 32111882 (-) False XLOC_001320
TCONS_00002161 mRNA downstream 1498776 31809185 ~ 31856622 (-) False XLOC_001319
TCONS_00002176 mRNA upstream 167508 33547532 ~ 33557915 (-) False XLOC_001326
TCONS_00002177 mRNA upstream 168364 33548388 ~ 33556428 (-) True XLOC_001326
TCONS_00002178 mRNA upstream 265020 33645044 ~ 33647169 (-) False XLOC_001328
TCONS_00002179 mRNA upstream 265307 33645331 ~ 33645967 (-) False XLOC_001328
TCONS_00002180 mRNA upstream 265464 33645488 ~ 33647138 (-) True XLOC_001328
TCONS_00002166 other downstream 353725 33001559 ~ 33001673 (-) True XLOC_001323
TCONS_00002165 other downstream 1036487 32316335 ~ 32318911 (-) True XLOC_001321
TCONS_00002139 other downstream 2593144 30736570 ~ 30762254 (-) True XLOC_001306
TCONS_00002135 other downstream 2713862 30618480 ~ 30641536 (-) True XLOC_001304
TCONS_00002134 other downstream 2742908 30589243 ~ 30612490 (-) False XLOC_001304
TCONS_00002186 other upstream 1066584 34446608 ~ 34450574 (-) True XLOC_001331
TCONS_00002191 other upstream 1288212 34668236 ~ 34668351 (-) True XLOC_001333
TCONS_00002192 other upstream 1299367 34679391 ~ 34681969 (-) True XLOC_001332
TCONS_00002194 other upstream 1328064 34708088 ~ 34713707 (-) False XLOC_001334
TCONS_00002196 other upstream 1328289 34708313 ~ 34713706 (-) False XLOC_001334

Expression Profile

//