RNA id: TCONS_00002178


Basic Information

Item Value
RNA id TCONS_00002178
length 1075
RNA type mRNA
GC content 0.43
exon number 2
gene id XLOC_001328
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 33645044 ~ 33647169 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATTTAAGGGATCGCACGAGAGTGTTTGTCAGTATGGCTACTTCCTAAAGGAGTTGATTTCTTGCacgtaattttgttttaatgtgtcTTGGTTTTTAGTGCTTTGTTTACTGTGAGAGAAATCAGTTGCAAGCTCATCTGTAGGTCACAGACATGTCTACTGGCTTGCAGCTCCTTGGAACAACACTAGGCACTCTTGGCTGGCTGGGCATAATTATATCATGTGCAATCCCTCTATGGCGTGTGACTGCCTTCATTGGAAACAACATTGTGACTGCACAGACGATGTGGGAAGGGCTGTGGATGAGCTGTGTGGTGCAGAGTACAGGCCAAATGCAGTGTAAAGTGTATGACTCCATGCTGGCTCTTGCCCAAGATCTGCAGGCCTCTCGAGCTATCCTTGTCATTTCTGCTATTGTTGGTTTAATTGCcatgtttgcaagttttgctgGTGGTAAATGTACTAATTGCCTGGCGGATAACTCCGCAAAGGCTCTGGTTGCTACAACAGGAGGCGTTGCCTTCATAATTGCAGGGATCTTGGGTTTGGTGCCACCTAGCTGGACCGCTAATACAATCATCAGAGACTTTTACAATCCTCTCGTAGCTGAAGCACAGAAGAGGGAGTTTGGAGCAGCCATCTTCATCTGCTGGGGGGCAGCAGTGCTCCTGGTTATTGGTGGAGGTCTCCTCTGCAGCTCTTACCCAAAAGGAAGAACCTCCAGCAGGGGTCGGTATACACCAGCTTCTCAAAATGGAAGAGAGCGCTCGGAGTATGTGTGACTGAAGGATGTCTGTTTGAAGAAATTATAGATTTGTTTTAGGTTTTTATCTATTTAAATGTCTGTCTGAGATCGTCTTTGTAAAGCAGAGATGAAGTGATCAATTGagctaataaaacacattttattcaacAGAGGGCAGTGTTTCATAACTTTAATTTTATACCTGTTTGAGGATGTACCCTTTGCAAACCAAAGAAGGCAATCTGCTGAAGTATGTTGAGCTAATTATGGGATGTTCTACCAGAAACCTTTTTaacttaaaacaaataataataaaagaaagtgATATGG

Function

GO:

id name namespace
GO:0070830 bicellular tight junction assembly biological_process
GO:0007155 cell adhesion biological_process
GO:0016338 calcium-independent cell-cell adhesion via plasma membrane cell-adhesion molecules biological_process
GO:0005886 plasma membrane cellular_component
GO:0005923 bicellular tight junction cellular_component
GO:0030054 cell junction cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0042802 identical protein binding molecular_function
GO:0005198 structural molecule activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-010328-7 Predicted to enable identical protein binding activity. Predicted to be involved in bicellular tight junction assembly and calcium-independent cell-cell adhesion via plasma membrane cell-adhesion molecules. Predicted to be located in cell junction and membrane. Predicted to be integral component of membrane. Predicted to be active in bicellular tight junction and plasma membrane. Is expressed in several structures, including digestive system; gonad; hematopoietic system; kidney; and mesoderm. Human ortholog(s) of this gene implicated in autosomal recessive nonsyndromic deafness 116. Orthologous to human CLDN6 (claudin 6) and CLDN9 (claudin 9).

Ensembl:

ensembl_id ENSDART00000015547

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00002174 lncRNA downstream 265050 33375207 ~ 33379994 (-) False XLOC_001325
TCONS_00002175 lncRNA downstream 265050 33375492 ~ 33379994 (-) True XLOC_001325
TCONS_00002173 lncRNA downstream 265053 33365183 ~ 33379991 (-) False XLOC_001325
TCONS_00003434 lncRNA downstream 316297 33324955 ~ 33328747 (-) True XLOC_001324
TCONS_00003433 lncRNA downstream 996315 32591816 ~ 32648729 (-) True XLOC_001322
TCONS_00002960 lncRNA upstream 57928 33705097 ~ 33709339 (-) False XLOC_001329
TCONS_00002961 lncRNA upstream 60605 33707774 ~ 33709325 (-) True XLOC_001329
TCONS_00002184 lncRNA upstream 729240 34376409 ~ 34381438 (-) False XLOC_001331
TCONS_00002198 lncRNA upstream 1063912 34711081 ~ 34713710 (-) False XLOC_001334
TCONS_00003436 lncRNA upstream 1080736 34727905 ~ 34728207 (-) True XLOC_001338
TCONS_00002176 mRNA downstream 87129 33547532 ~ 33557915 (-) False XLOC_001326
TCONS_00002177 mRNA downstream 88616 33548388 ~ 33556428 (-) True XLOC_001326
TCONS_00002169 mRNA downstream 264704 33353174 ~ 33380340 (-) False XLOC_001325
TCONS_00002170 mRNA downstream 265020 33355398 ~ 33380024 (-) False XLOC_001325
TCONS_00002171 mRNA downstream 265033 33356175 ~ 33380011 (-) False XLOC_001325
TCONS_00002181 mRNA upstream 674405 34321574 ~ 34335752 (-) True XLOC_001330
TCONS_00002182 mRNA upstream 718676 34365845 ~ 34450784 (-) False XLOC_001331
TCONS_00002183 mRNA upstream 719680 34366849 ~ 34447515 (-) False XLOC_001331
TCONS_00002185 mRNA upstream 781153 34428322 ~ 34450622 (-) False XLOC_001331
TCONS_00002187 mRNA upstream 946321 34593490 ~ 34612613 (-) False XLOC_001332
TCONS_00002172 other downstream 265076 33365183 ~ 33379968 (-) False XLOC_001325
TCONS_00002166 other downstream 643371 33001559 ~ 33001673 (-) True XLOC_001323
TCONS_00002165 other downstream 1326133 32316335 ~ 32318911 (-) True XLOC_001321
TCONS_00002139 other downstream 2882790 30736570 ~ 30762254 (-) True XLOC_001306
TCONS_00002135 other downstream 3003508 30618480 ~ 30641536 (-) True XLOC_001304
TCONS_00002186 other upstream 799439 34446608 ~ 34450574 (-) True XLOC_001331
TCONS_00002191 other upstream 1021067 34668236 ~ 34668351 (-) True XLOC_001333
TCONS_00002192 other upstream 1032222 34679391 ~ 34681969 (-) True XLOC_001332
TCONS_00002194 other upstream 1060919 34708088 ~ 34713707 (-) False XLOC_001334
TCONS_00002196 other upstream 1061144 34708313 ~ 34713706 (-) False XLOC_001334

Expression Profile

//