XLOC_001338


Basic Information

Item Value
gene id XLOC_001338
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 34727905 ~ 34728207 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003436
GTGGAGGATTCAGACTATGATGATGTTGAGACTTTGCTGCAGAAGATGACTGGAGACACATGGAGCAGCGTTACCTACTTCACAGTAGGAAGAAAGCAAACAACTTATAAAGCTGTCACACAACTcagttaaaggcacaatatgtacgaTTATTTTGGTAACacattcaacacaggctcattctgaaaccgtagccctatatatgtttctggaga

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003436 True 215 lncRNA 0.41 2 34727905 34728207

Neighbor

gene id symbol gene type direction distance location
XLOC_001334 tpt1 coding downstream 14037 34707932 ~ 34713868 (-)
XLOC_001337 CR339054.2 coding downstream 15322 34712513 ~ 34712583 (-)
XLOC_001336 CR339054.1 coding downstream 15902 34711932 ~ 34712003 (-)
XLOC_001335 CR339054.3 coding downstream 19278 34708497 ~ 34708627 (-)
XLOC_001332 pibf1 coding downstream 42576 34593490 ~ 34685329 (-)
XLOC_001339 CR339054.5 coding upstream 15252 34743459 ~ 34748322 (-)
XLOC_001340 si:dkey-151m22.8 coding upstream 20488 34748695 ~ 34750169 (-)
XLOC_001341 BX897691.1 coding upstream 226490 34954697 ~ 35113974 (-)
XLOC_001342 NA coding upstream 256348 34984555 ~ 34997788 (-)
XLOC_001343 NA coding upstream 257371 34985578 ~ 34988958 (-)
XLOC_001333 CR339054.6 non-coding downstream 59554 34668236 ~ 34668351 (-)
XLOC_001329 NA non-coding downstream 1018566 33705097 ~ 33709339 (-)
XLOC_001344 NA non-coding upstream 504867 35233074 ~ 35278026 (-)
XLOC_001345 CR786582.1 non-coding upstream 589147 35317354 ~ 35318209 (-)

Expression


Co-expression Network