XLOC_001342


Basic Information

Item Value
gene id XLOC_001342
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 34984555 ~ 34997788 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003437
aaaatcaacaaacaaatgtggcaaaataaatcagTACCTGGTGAAGCAGAAGACCGACCTGCTTCTTCCTCCTCATCTCTGTCTGGACTCTGATCTGTTGACCACTCTTAAATACACTTTCCATTCCTGGGACATTTCAGATCAACAGCAATCTATGTAGAGAAGGTTTTGAAAGGCTGGAAACATTTTAACGCTGACTTTTTGTGACTAATCCTTTTGTAAATAAGGCAAGCAACCATAAAGTAAGGGCAGCAATATTAGCCCTCCCgtcaaatattttttcttttttcaaatatttctcaagcaATATTTCAtcgagcaaggcaattttcaccatatttctgattatttttgtttcttcCAGAGAAGGTCctagttgttttatttaaaatattatgtacttcaatcatggcaaag
>TCONS_00003438
aaaatcaacaaacaaatgtggcaaaataaatcagTACCTGGTGAAGCAGAAGACCGACCTGCTTCTTCCTCCTCATCTCTGTCTGGACTCTGATCTGTTGACCACTCTTAAATACACTTTCCATTCCTGGGACATTTCAGATCAACAGCAATCTATGTAGAGAAGGTTTTGAAAGGCTGGAAACATTTTAACGCTGACTTTTTGTGACTAATCCTTTTGTAAATAAGGCAAGCAACCATAAAGTAAGGGCAGCAATATTAGCCCTCCCgtcaaatattttttcttttttcaaatatttctcaagcaATATTTCAtcgagcaaggcaattttcaccatatttctgattatttttgtttcttcCAGAGAAGGTCctagttgttttatttaaaatattatgtacttcaatcatggcaaag

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003437 False 417 lncRNA 0.36 2 34984555 34985057
TCONS_00003438 True 417 lncRNA 0.36 2 34984555 34997788

Neighbor

gene id symbol gene type direction distance location
XLOC_001340 si:dkey-151m22.8 coding downstream 234386 34748695 ~ 34750169 (-)
XLOC_001339 CR339054.5 coding downstream 236233 34743459 ~ 34748322 (-)
XLOC_001338 NA coding downstream 256348 34727905 ~ 34728207 (-)
XLOC_001337 CR339054.2 coding downstream 271972 34712513 ~ 34712583 (-)
XLOC_001336 CR339054.1 coding downstream 272552 34711932 ~ 34712003 (-)
XLOC_001344 NA coding upstream 235286 35233074 ~ 35278026 (-)
XLOC_001345 CR786582.1 coding upstream 319566 35317354 ~ 35318209 (-)
XLOC_001346 NA coding upstream 334516 35332304 ~ 35335416 (-)
XLOC_001347 frem3 coding upstream 616301 35614089 ~ 35653560 (-)
XLOC_001348 si:dkey-27h10.2 coding upstream 664686 35662474 ~ 35695724 (-)
XLOC_001335 CR339054.3 non-coding downstream 275928 34708497 ~ 34708627 (-)
XLOC_001350 NA non-coding upstream 954407 35952195 ~ 35953194 (-)
XLOC_001351 NA non-coding upstream 956190 35953978 ~ 35955838 (-)
XLOC_001334 tpt1 coding downstream 270687 34707932 ~ 34713868 (-)

Expression


Co-expression Network