XLOC_001350


Basic Information

Item Value
gene id XLOC_001350
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 35952195 ~ 35953194 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00002965
ATGTTCTCTAATAAAATGGAAGTCTTGAGTTTCATAACCCACAAGCTTCTGGATACTGAAGAAACTCGCTGTAGAAAATCAAACATTCAAATCTCTTTCCTTTCAGGCACAAAGGCATATGCCTTCCCGATACCATTGGCTGTGGTATCTGCCTTCCTTGTTGATTGCCATTTGATCAAAGCCTGCATACATCCAGATCCCAAGAAGAGGATTCCTCTTGACAGGATTCTTCTACACGACTTTCAAAAGaTCATTTAAGTTGTGGAGGCTGGAGCACCTTGTGCCGACCACCCAGGAGGTTCACTTTAGTCATCTTACCAATGGCTAGCTAACACCAGTGGCCTCTCCATCCCTCCAATCCTTTGCGTCTTGCAAGGATTACAAACTCAGGTAGCGTCTGGTGTCTAGGGATGTATAGTTGTACatagatttcattttaaaaaaatgtattgttgaatTGAATGTTTTGTTGGTGTCATTTTTGTACAATTATTAGTCTCCCCAATAGGTCGAGTTCAAATCATCTGTACAgctgtatatatattcattcattcattttcttgtcgacttactccctttattaatccggggtcgcccccgccaacatatccagcatgtttttacacagcggatgcccttccagccgcaacccatttctgggaaacatccacactctgtgggggaaaccggagcacccggagaaaacccacgcgaatgcagggagaacatgcaaactcctcacagaacaGCCAACTAAGCCAAgtttcgaaccagcgacattctttctgtgaggcgacagcattacctactgtgcca
>TCONS_00002964
ATGTTCTCTAATAAAATGGAAGTCTTGAGTTTCATAACCCACAAGCTTCTGGATACTGAAGAAACTCGCTGTAGAAAATCAAACATTCAAATCTCTTTCCTTTCAGGCACAAAGGCATATGCCTTCCCGATACCATTGGCTGTGGTATCTGCCTTCCTTGTTGATTGCCATTTGATCAAAGCCTGCATACATCCAGATCCCAAGAAGAGGATTCCTCTTGACAGGATTCTTCTACACGACTTTCAAAAGGCAAGACATGTGTTATACAAAGGTCAAAGTCTGTTTTTTAGATAGTAaacttgattttgtttgtttttctttagaTCATTTAAGTTGTGGAGGCTGGAGCACCTTGTGCCGACCACCCAGGAGGTTCACTTTAGTCATCTTACCAATGGCTAGCTAACACCAGTGGCCTCTCCATCCCTCCAATCCTTTGCGTCTTGCAAGGATTACAAACTCAGGTAGCGTCTGGTGTCTAGGGATGTATAGTTGTACatagatttcattttaaaaaaatgtattgttgaatTGAATGTTTTGTTGGTGTCATTTTTGTACAATTATTAGTCTCCCCAATAGGTCGAGTTCAAATCATCTGTACAgctgtatatatattcattcattcattttcttgtcgacttactccctttattaatccggggtcgcccccgccaacatatccagcatgtttttacacagcggatgcccttccagccgcaacccatttctgggaaacatccacactctgtgggggaaaccggagcacccggagaaaacccacgcgaatgcagggagaacatgcaaactcctcacagaacaGCCAACTAAGCCAAgtttcgaaccagcgacattctttctgtgaggcgacagcattacctactgtgcca

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00002965 False 816 lncRNA 0.44 3 35952195 35953194
TCONS_00002964 True 890 lncRNA 0.43 2 35952195 35953194

Neighbor

gene id symbol gene type direction distance location
XLOC_001349 smad1 coding downstream 23052 35896488 ~ 35929143 (-)
XLOC_001348 si:dkey-27h10.2 coding downstream 256471 35662474 ~ 35695724 (-)
XLOC_001347 frem3 coding downstream 298635 35614089 ~ 35653560 (-)
XLOC_001346 NA coding downstream 616779 35332304 ~ 35335416 (-)
XLOC_001345 CR786582.1 coding downstream 633986 35317354 ~ 35318209 (-)
XLOC_001351 NA coding upstream 784 35953978 ~ 35955838 (-)
XLOC_001352 NA coding upstream 19426 35972620 ~ 35973783 (-)
XLOC_001353 znf827 coding upstream 64673 36017867 ~ 36152131 (-)
XLOC_001354 BX324156.2 coding upstream 234990 36188184 ~ 36218748 (-)
XLOC_001355 NA coding upstream 395499 36348693 ~ 36351488 (-)
XLOC_001344 NA non-coding downstream 674169 35233074 ~ 35278026 (-)
XLOC_001342 NA non-coding downstream 954407 34984555 ~ 34997788 (-)
XLOC_001356 NA non-coding upstream 402587 36355781 ~ 36356466 (-)
XLOC_001357 NA non-coding upstream 471574 36424768 ~ 36472822 (-)
XLOC_001343 NA non-coding downstream 963237 34985578 ~ 34988958 (-)

Expression


Co-expression Network