XLOC_001348 (si:dkey-27h10.2)


Basic Information

Item Value
gene id XLOC_001348
gene name si:dkey-27h10.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 35662474 ~ 35695724 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00002214
TGGTTAACTATCTGCTGCATCCTGTGCTGGTCATAGAAGTGGAAGTTACGTGGTTTCAGAGTGAGTATATGAACTGTCCTGAGGAAGGAACATACATATTACAAGATAGCATCTTTTCTCAAGATGTGCTACGCATCACTTCATCTCTTTCTTGGGGCCATACTTGTCCTCGCAGTTGGAAATGAGGCCACAACTATGATAAACGGCACAAACAGCACCTTTATAGTTTTAAAGCCTGATAACACcaccaacaacaaaacaattcTGGACAACTCTACTGTAACTTCATCACCTATATCGACTACTGTTCTATCAAACACAACAGAAGCCAACGACACATTAGATGAAGGATCAGCAGATTCACCCAATCCTTCACCAATCTCTGAAGAACCGCAGACCACTAGCACCACAGACAATCCTCTGAACAAAGTCCCACAAGTCAGCACAAATGCTACGATTCAAACAACAACCAGAACAAGAACCAGCATAACAACTTGTACAACAACCAcaactAAAGCACCAGAGCCCAAAAAACATGGACCAGcttaCATAATTATTCTGGTCATTGCTGTTCTGTGCATCACTGGAGTAGTAGTTTACTGCTGCCTTCAAAAGAACTCCAGGAAGTATTCTGTCGACTTGCACCCTAAAAAAGAAGATGCTCAGATTCCACTCAGCACAGTGGATGCAGAAGTGTTTGACACCACGTCAGAAAAAGATTTGCAAACATTTGCTCCAGTTGAGCCAGTAAAGGACCCTGACATTGGGAAGGAAGCTGAAAAGCCTGAGGAAGGAAAAGAAATACCTGATGTTAAACAAGAAAACCAACAGAATTTTTCCACTCCTGAGGCCACGGTGATTCCAAATGACAAAAAAGATGAACTGACTGTAGTGGATCTGACTGATGCAGAACCAGCGATCTCAACCAAAACCTCAATGGAATCACTAGATGATACTCTTAatgaaaacaacagcaacaacacaaGAATTGAAGGCATTGCCAATGGGTATGAATTCATTGAGATCTTTCTTGATGGTCCACTCTAAAATAAATCAACTCCTTCCCAACAATTTACAATGaTCTTTGAACCTGATTGATGGATTTTTGACTCTGCAACATGGAAAACAACTTCTTCATTTTTACCTGTGTGTAAGTCTACTTTTCAGAACAATGTtagttggatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatagtataaaatcTGTAACATTATGGACAGTGCCTATTCTGTTTTTGCCTAGACCATACATAGTTTTAATGTTCTGTTTAAGTACACAATACATTGTCTTACACTGCTTActttattgataaaaaaatatgtataacttaTGTAAATGAAATGTCTTCAGATTACAATAGTGCTCAGCTTTTTCTCTTGAATGTATAATCTTAAGCTTTCAATGCACATGATTGTAAAATGTAAGTACATATTTGTATTTTACTGTTTGCCTTCACAACCTGTATTATtacttacattacattattactttacattacattagGAATAGTCTCTGTGCAATTCTTTCACACTTCTTTCAAAGCAGATGTTCATTGCTTACTAAGTTTTGGCCAATTTCAAACGATTTTATTAAATTGTACAGTATCTTTGTAAAAATCCCCATGGTCTTTATGAAAACATCCAGTTGGGTGCAATGTGGGTTTAGAATGAATTGCTTGTCAATTGTACTCTCATTATGTCAAGTGCTACAATAAAATTAATTCCAATTAtagatgttatttattttttattatttgtaatctaATAGTTTAGTTTATGTATACACGgtaaaaacttttcaaaataaatttgagtagattgaacataaaacaattaggttatctaaaaaacaataattgtgttgtttcagcttattttaaatagtttgaacaaacagcaaatgtaatttttggaGTGTATATCATGTTCTGGCTGctcattttacttttttacttttttacttttttgtttgttattgcatCTATACAGTTCAAAAGTAACTGCTATCACTGTTGGTTAGTGTAAATTTCTGAAGAAACATTGTGTAATACAACAGACTAAATTGTATCAGATGCATGTtctatttgtaataaaataagtTTACTGTATCAGATCTGTATTGTATATTGTTCCGAACAACCAAGCAAATGCTAAAATAGATGGTTACATGACCGACCagcaataaaatttttatttctgGTTGGAAGTAGTTAAGACTGCATTTACGAGATGCCTTCACCCACAAACGTTAATAGAGAACATCAGCTGTTCATCATTTATCTGCCTGTTAAAGCCATTTAATCAATTCTGTAGCCCCTTACAGAACGTTTTTGAAGCACAAGCAGAACATTTAGGGACATGC
>TCONS_00002215
CAGATTCACCCAATCCTTCACCAATCTCTGAAGAACCGCAGACCACTAGCACCACAGACAATCCTCTGAACAAAGTCCCACAAGTCAGCACAAATGCTACGATTCAAACAACAACCAGAACAAGAACCAGCATAACAACTTGTACAACAACCAcaactAAAGCACCAGAGCCCAAAAAACATGGACCAGcttaCATAATTATTCTGGTCATTGCTGTTCTGTGCATCACTGGAGTAGTAGTTTACTGCTGCCTTCAAAAGAACTCCAGGAAGTATTCTGTCGACTTGCACCCTAAAAAAGAAGATGCTCAGATTCCACTCAGCACAGTGGATGCAGAAGTGTTTGACACCACGTCAGAAAAAGTTGAGCCAGTAAAGGACCCTGACATTGGGAAGGAAGCTGAAAAGCCTGAGGAAGGAAAAGAAATACCTGATGTTAAACAAGAAAACCAACAGAATTTTTCCACTCCTGAGGCCACGGTGATTCCAAATGACAAAAAAGATGAACTGACTGTAGTGGATCTGACTGATGCAGAACCAGCGATCTCAACCAAAACCTCAATGGAATCACTAGATGATACTCTTAatgaaaacaacagcaacaacacaaGAATTGAAGGCATTGCCAATGGGTATGAATTCATTGAGATCTTTCTTGATGGTCCACTCTAAAATAAATCAACTCCTTCCCAACAATTTACAATGTGAGTATTCTAGAGCAGCAGCTTCAGAGGTCTAGCTGT
>TCONS_00002216
ATCTTTTCTCAAGATGTGCTACGCATCACTTCATCTCTTTCTTGGGGCCATACTTGTCCTCGCAGTTGGAAATGAGGCCACAACTATGATAAACGGCACAAACAGCACCTTTATAGTTTTAAAGCCTGATAACACcaccaacaacaaaacaattcTGGACAACTCTACTGTAACTTCATCACCTATATCGACTACTGTTCTATCAAACACAACAGAAGCCAACGACACATTAGATGAAGGATCAGCAGATTCACCCAATCCTTCACCAATCTCTGAAGAACCGCAGACCACTAGCACCACAGACAATCCTCTGAACAAAGTCCCACAAGTCAGCACAAATGCTACGATTCAAACAACAACCAGAACAAGAACCAGCATAACAACTTGTACAACAACCAcaactAAAGCACCAGAGCCCAAAAAACATGGACCAGcttaCATAATTATTCTGGTCATTGCTGTTCTGTGCATCACTGGAGTAGTAGTTTACTGCTGCCTTCAAAAGAACTCCAGGAAGTATTCTGTCGACTTGCACCCTAAAAAAGAAGATGCTCAGATTCCACTCAGCACAGTGGATGCAGAAGTGTTTGACACCACGTCAGAAAAAGATTTGCAAACATTTGCTCCAGTTGAGCCAGTAAAGGACCCTGACATTGGGAAGGAAGCTGAAAAGCCTGAGGAAGGAAAAGAAATACCTGATGTTAAACAAGAAAACCAACAGAATTTTTCCACTCCTGAGGCCACGGTGATTCCAAATGACAAAAAAGATGAACTGACTGTAGTGGATCTGACTGATGCAGAACCAGCGATCTCAACCAAAACCTCAATGGAATCACTAGATGATACTCTTAatgaaaacaacagcaacaacacaaGAATTGAAGGCATTGCCAATGGGTATGAATTCATTGAGATCTTTCTTGATGGTCCACTCTAAAATAAATCAACTCCTTCCCAACAATTTACAATGTGAGTATTCTAGAGCAGCAGCTTCAGAGGTCTAGCTGT
>TCONS_00002217
CATCTTTTCTCAAGATGTGCTACGCATCACTTCATCTCTTTCTTGGGGCCATACTTGTCCTCGCAGTTGGAAATGAGGCCACAACTATGATAAACGGCACAAACAGCACCTTTATAGTTTTAAAGCCTGATAACACcaccaacaacaaaacaattcTGGACAACTCTACTGTAACTTCATCACCTATATCGACTACTGTTCTATCAAACACAACAGAAGCCAACGACACATTAGATGAAGGATCAGATTCACCCAATCCTTCACCAATCTCTGAAGAACCGCAGACCACTAGCACCACAGACAATCCTCTGAACAAAGTCCCACAAGTCAGCACAAATGCTACGATTCAAACAACAACCAGAACAAGAACCAGCATAACAACTTGTACAACAACCAcaactAAAGCACCAGAGCCCAAAAAACATGGACCAGcttaCATAATTATTCTGGTCATTGCTGTTCTGTGCATCACTGGAGTAGTAGTTTACTGCTGCCTTCAAAAGAACTCCAGGAAGTATTCTGTCGACTTGCACCCTAAAAAAGAAGATGCTCAGATTCCACTCAGCACAGTGGATGCA

Function

symbol description
si:dkey-27h10.2 Predicted to be located in membrane. Predicted to be integral component of membrane.

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-090313-296 Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDARG00000094485

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00002214 False 2411 mRNA 0.34 10 35662474 35695724
TCONS_00002215 False 742 mRNA 0.42 8 35665773 35694978
TCONS_00002216 False 1008 mRNA 0.42 10 35665773 35695614
TCONS_00002217 True 578 mRNA 0.43 6 35690955 35695615

Neighbor

gene id symbol gene type direction distance location
XLOC_001347 frem3 coding downstream 8914 35614089 ~ 35653560 (-)
XLOC_001346 NA coding downstream 327058 35332304 ~ 35335416 (-)
XLOC_001345 CR786582.1 coding downstream 344265 35317354 ~ 35318209 (-)
XLOC_001344 NA coding downstream 384448 35233074 ~ 35278026 (-)
XLOC_001342 NA coding downstream 664686 34984555 ~ 34997788 (-)
XLOC_001349 smad1 coding upstream 200764 35896488 ~ 35929143 (-)
XLOC_001350 NA coding upstream 256471 35952195 ~ 35953194 (-)
XLOC_001351 NA coding upstream 258254 35953978 ~ 35955838 (-)
XLOC_001352 NA coding upstream 276896 35972620 ~ 35973783 (-)
XLOC_001353 znf827 coding upstream 322143 36017867 ~ 36152131 (-)
XLOC_001355 NA non-coding upstream 652969 36348693 ~ 36351488 (-)
XLOC_001356 NA non-coding upstream 660057 36355781 ~ 36356466 (-)

Expression


Co-expression Network