XLOC_001344


Basic Information

Item Value
gene id XLOC_001344
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 35233074 ~ 35278026 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00002962
AACCAGCGTCTTCCATGGTTACAAGCATTACCTGAGCCCTGTTTTCCTTATTTCAGTCTCTTAATTTCTTTCTTAGGGAAAGTAATTAAAACTCCTGTTATGACAGAGCTGAAGATAAACTGCACTGTAACTGTAGGATGTCAGAGGATCCCAATAATCTCATGGTGCAAAATCTATGGAGATACCTGCAAAACTTTAATTCACTCAGATGTCATAAAAACTGagtggaagaaaaaaacagaacatgaAGGAATGGCGTTCCTGATTTTCCAGAACATCTCAATGGAGAATGCAGGTTTATACAGGTGTAAATATAGTGACACGTCTGTAAGCCATACTATACATAACAGTTCCTGCTCTACTGAATCCAGTTCCAGATGATGATGTGCAGTTGTTCTGGCCGTATCTGTACATCTGCAGTGGAATATTGGGGCTGGTGATCATTATGACTCTATTACTAGTTTACGTTGTAGGTGAGTGAATGAAACTTAAAGGtgattaaattaaacttaacagTTGCTTAAAAATCACCTTTTTTAAAGGGAggaaatcaacaaacaaatgtgccaaaataaatcaggtatcTTTTATAATAACTTAGTATAAATGCTGTCATAGATTAGTTTATTACTTGTAGATTTTTAAACTGTCTGTTTTTGACGTTTACAGTACATGGTAAAGCAAAACAGAGACCTGCTTCTTCCTCCTCATCTGGACTGTCTGGATTCTGATCTGTTGACCACTGTTGAATACACTTTCCATTCCTGGGACATTTCAGAGCAACAGCAGTCTATGTAGAGGTTTTAAACCCTGAAAACATTTTGAGGCTGACATTTTGTGATTAACCGTTTATCATGCAAAGAACCATATATGTTAACTTCACTGACATCCATTACAATATAATTTTGAAAGTCATAAAAGTTCAAAAGTCTTGTAATAACCCCTAGTAaatctctttttttccccctccaaTGAGTGCCCTATACATAGTTAAGCTCATATTTTGCATTGCTGATTGCTTTGAAGCATGAAACCTAGTCAGACTGTATATACGACATTGTTCCACATTTGCTTTAGAAAAACTAGATTTTGGGGTTTGTGAATCAGTaaataagtgttttaataaataaacaattttaaaacagaaaaaaattcatttaaactGCATAAACAGTAACCTGGGTGTCTGAGCATTTTGGCTCAGTGAATAAGATATACAGAAAATATATCTAGATACATATATTACCCACAATTCACAAACCAGATACAGGGAAGATCATAGCATAGATGGGGAAGGGAATAAAAATCTTTTAATAATACAAACTTCAAG
>TCONS_00003440
CAGACACAAAGGGAggaaatcaacaaacaaatgtgccaaaataaatcagTACATGGTAAAGCAAAACAGAGACCTGCTTCTTCCTCCTCATCTGGACTGTCTGGATTCTGATCTGTTGACCACTGTTGAATACACTTTCCATTCCTGGGACATTTCAGAGCAACAGCAGTCTATGTAGAGGTTTTAAACCCTGAAAACATTTTGAGGCTGACATTTTGTGATTAACCGTTTATCATGCAAAGAACCATATATGTTAACTTC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00002962 False 1330 lncRNA 0.35 2 35233074 35234582
TCONS_00003440 True 261 lncRNA 0.39 3 35233523 35278026

Neighbor

gene id symbol gene type direction distance location
XLOC_001341 BX897691.1 coding downstream 119100 34954697 ~ 35113974 (-)
XLOC_001342 NA coding downstream 235286 34984555 ~ 34997788 (-)
XLOC_001343 NA coding downstream 244116 34985578 ~ 34988958 (-)
XLOC_001340 si:dkey-151m22.8 coding downstream 482905 34748695 ~ 34750169 (-)
XLOC_001339 CR339054.5 coding downstream 484752 34743459 ~ 34748322 (-)
XLOC_001345 CR786582.1 coding upstream 39328 35317354 ~ 35318209 (-)
XLOC_001346 NA coding upstream 54278 35332304 ~ 35335416 (-)
XLOC_001347 frem3 coding upstream 336063 35614089 ~ 35653560 (-)
XLOC_001348 si:dkey-27h10.2 coding upstream 384448 35662474 ~ 35695724 (-)
XLOC_001349 smad1 coding upstream 618462 35896488 ~ 35929143 (-)
XLOC_001338 NA non-coding downstream 504867 34727905 ~ 34728207 (-)
XLOC_001337 CR339054.2 non-coding downstream 520491 34712513 ~ 34712583 (-)
XLOC_001350 NA non-coding upstream 674169 35952195 ~ 35953194 (-)
XLOC_001351 NA non-coding upstream 675952 35953978 ~ 35955838 (-)
XLOC_001352 NA non-coding upstream 694594 35972620 ~ 35973783 (-)

Expression


Co-expression Network