XLOC_001339 (CR339054.5)


Basic Information

Item Value
gene id XLOC_001339
gene name CR339054.5
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 34743459 ~ 34748322 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00002203
AATAACCATTTATTAGTATTGTTACTGTTGCCCTGGTTCAGTGCTGAGATCACTGTGTTTGTGCAGACTGGAGATTCTACACAACAACTACCAGAGTTTGATGATTTATTCTGGATAAatgataaatatgaatatatagttaaatattcTAATGAATATAAGAAGATTAAAACTTACTCGTCATATCAGAACAGAATAGAGTTTAATGAAACAAGCTTCTCTCTGACACTGAAGAACATGCAGAAGGCAGACAGTGGACGATACACAGCAAGAATAAACAGAGATTTAGACAAAGACATGTTGTATACAGAGTaTGCAGTGGAGGCTCCTGTTCTGACTGTAAACTCAATCAGCTGTGACTCCTGTACTGTTAACTTCACATGCAGAGCTCAAGACCTCATCATTAATAACTCTAGCTATCAGAACAACCATTGCTCAccagaggaagtgacatcacagCAGATCAACACCCTCATCCTGTTCTGCAGTGAGGAATCGATCTTCTGTAACTACAGCAATCCTGTCAGCTGGAAAAAAGAGGAAATGGAGATTAAACCACTCTGTAGAGggaaggaagagggtgggtcagttgatcggtcagtcagtcaaacagtcagtcgacagtggcctaaGGTGGGTTTTGGCAAGAACAGCATGCActaa
>TCONS_00002204
GGTTCAGTGCTGAGATCACTGTGTTTGTGCAGACTGGAGATTCTGTTTAACTGGATTTACAGACACAACAACTACCAGAGTTTGATGATTTATTCTGGATAAatgataaatatgaatatatagttaaatattcTAATGAATATAAGAAGATTAAAACTTACTCGTCATATCAGAACAGAATAGAGTTTAATGAAACAAGCTTCTCTCTGACACTGAAGAACATGCAGAAGGCAGACAGTGGACGATACACAGCAAGAATAAACAGAGATTTAGACAAAGACATGTTGTATACAGAGTGTCTGTTATAGCTGAGTGTCATTTCTGTGTGTGATTTAACATTTTGCTCCATAAAAGACTATTCATAATTCATAAATGTAGTTTATGTTCAGTTTTTCACTTTCAGATATGCAGATTTAAATCAGCTTACACCACTTTGTCTTTAGTTCAGGATTTTATCTCCTACTGCAGTTATAATTGACTAGTTAATACTCTTGTATGTGTATAAATGGTTTGGTCTTCAGCTTTGACAGTATATCGTATCACTCAGCTGATTGTGATCCTGtaagtgtaaatgtgtgttttagaTGCAGTGGAGGCTCCTGTTCTGACTGTAAACTCAATCAGCTGTGACTCCTGTACTGTTAACTTCACATGCAGAGCTCAAGACCTCATCATTAATAACTCTAGCTATCAGAACAACCATTGCTCAccagaggaagtgacatcacagCAGATCAACACCCTCATCCTGTTCTGCAGTGAGGAATCGATCTTCTGTAACTACAGCAATCCTGTCAGCTGGAAAAAAGAGGAAATGGAGATTAAACCACTCTGTAGAGAGAAAGAAATATCACTAAAACCCGCCCCTCGTCTATCTTTCATTGTGTTGATTACTGGagtgataataatgatgatagcGTTTGCTGGTTTGATCCTTTACTGTGTC

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000095892

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00002203 False 663 processed_transcript 0.40 5 34743459 34748322
TCONS_00002204 True 946 processed_transcript 0.37 2 34746069 34747117

Neighbor

gene id symbol gene type direction distance location
XLOC_001338 NA coding downstream 15252 34727905 ~ 34728207 (-)
XLOC_001334 tpt1 coding downstream 29591 34707932 ~ 34713868 (-)
XLOC_001337 CR339054.2 coding downstream 30876 34712513 ~ 34712583 (-)
XLOC_001336 CR339054.1 coding downstream 31456 34711932 ~ 34712003 (-)
XLOC_001335 CR339054.3 coding downstream 34832 34708497 ~ 34708627 (-)
XLOC_001340 si:dkey-151m22.8 coding upstream 373 34748695 ~ 34750169 (-)
XLOC_001341 BX897691.1 coding upstream 206375 34954697 ~ 35113974 (-)
XLOC_001342 NA coding upstream 236233 34984555 ~ 34997788 (-)
XLOC_001343 NA coding upstream 237256 34985578 ~ 34988958 (-)
XLOC_001344 NA coding upstream 484752 35233074 ~ 35278026 (-)
XLOC_001333 CR339054.6 non-coding downstream 75108 34668236 ~ 34668351 (-)
XLOC_001345 CR786582.1 non-coding upstream 569032 35317354 ~ 35318209 (-)
XLOC_001346 NA non-coding upstream 583982 35332304 ~ 35335416 (-)

Expression


Co-expression Network