XLOC_001334 (tpt1)


Basic Information

Item Value
gene id XLOC_001334
gene name tpt1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 34707932 ~ 34713868 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00002193
GGAAACTGTCTATGAAACGGAGGAGATTTGATGTCACACCGTTAGAGGGCGCGCGTGACTCTCAGCGCATATATAAGATGTTCAATCCACGCGCCGGCCTTTTCAGCTGAGTCCACGATCAGGTCACAGCCAGCGCTGTTCGCCTTCTGATATCCCCAGACACAATCCAACAAAATGATCATCTACAAGGACATCATCACTGGGGATGAGATGTTCTCAGACATCTACAAAATCAAAGAGTCTGAGAATGGAATGATGCTTGAAGTGGAGGGAAAGATGATCACCAGAGCAGAAGGAGACATTGATGATGCCCTGATTGGTGGCAATGCGTCAGCAGAAGTTGCGGATGAGGGCTGTGACAGCACTTCTGTCAGCGGTGTGGACATAGTCCTCAACCACAAACTTCAGGAGACCTCCTACGACAAGAAGTCTTACACAGCCTACATCAAAGACTACATGAAGGCAGTTAAGGCCAAGTTGCAGGAAAGTGCACCTAATAGGGTAGATCCCTTTATGGCTAACGCACCGGCTGAGGTCAAGAAAATCCTAGGCAACATCAAAAACTTTCAGTTTTTCACTGGTGAATCCATGAACCCTGATGGCATGATCGGTCTCCTTGACTTTCGTGAGGATGGAGTCACACCATACATGATCTTCTTCAAGGATGGTCTTGAGATTGAAAAATGCTAAACGTCCCACGCTTCTACAAATCACCCCTCAAACTCTGGCCTCTGCTTGATGGTTTGGCCCGTGGATTAAACCAGTCATTCCCCCTCATCCTTTCCATCAGGACCAGAGGCTCTTTTAACTTCACGAGGCCACTGTTTTCATTTCTTGATTGGCTTATGTCCGTCTACAGCAAGAAGACGCGAACGTTCCCTTCATGAAATTTAAAAACAGGACTTTTAGCAAGCCAAGCCACAACGCGCAGAGATTGTGGTCAAGAAACTGAGTCATTTTTGGGGTTCTATTTTATGTCTTGGTCTTCATGGAAGTGAAGTTGACTGCTGGCTTCTCATTTGCTGTGCATGTCGGCTTCTCATTTCAGCAGATGTACAGTTGTAATTTCCCCCTTTCCATCACAGGATTGTATAGGATTTCTCAGCACCGTTATTGAATAAAATCAAGCTGCTGGCTTA
>TCONS_00002194
CCGGCCTTTTCAGCTGAGTCCACGATCAGGTCACAGCCAGCGCTGTTCGCCTTCTGATATCCCCAGACACAATCCAACAAAATGATCATCTACAAGGACATCATCACTGATGATCACCAGAGCAGAAGGAGACATTGATGATGCCCTGATTGGTGGCAATGCGTCAGCAGAAGTTGCGGATGAGGGCTGTGACAGCACTTCTGTCAGCGGTGTGGACATAGTCCTCAACCACAAACTTCAGGAGACCTCCTACGACAAGAAGTCTTACACAGCCTACATCAAAGACTACATGAAGGCAGTTAAGGCCAAGTTGCAGGAAAGTGCACCTAATAGGGTAGATCCCTTTATGGCTAACGCACCGGCTGAGGTCAAGAAAATCCTAGGCAACATCAAAAACTTTCAGTTTTTCACTGGTGAATCCATGAACCCTGATGGCATGATCGGTCTCCTTGACTTTCGTGAGGATGGAGTCACACCATACATGATCTTCTTCAAGGATGGTCTTGAGATTGAAAAATGCTAAACGTCCCACGCTTCTACAAATCACCCCTCAAACTCTGGCCTCTGCTTGATGGTTTGGCCCGTGGATTAAACCAGTCATTCCCCCTCATCCTTTCCATCAGGACCAGAGGCTCTTTTAACTTCACGAGGCCACTGTTTTCATTTCTTGATTGGCTTATGTCCGTCTACAGCAAGAAGACGCGAACGTTCCCTTCATGAAATTTAAAAACAGGACTTTTAGCAAGCCAAGCCACAACGCGCAGAGATTGTGGTCAAGAAACTGAGTCATTTTTGGGGTTCTATTTTATGTCTTGG
>TCONS_00002195
GCGCCGGCCTTTTCAGCTGAGTCCACGATCAGGTCACAGCCAGCGCTGTTCGCCTTCTGATATCCCCAGACACAATCCAACAAAATGATCATCTACAAGGACATCATCACTGtgctgttgttgtttttccacAGGGGATGAGATGTTCTCAGACATCTACAAAATCAAAGAGTCTGAGAATGGAATGATGCTTGAAGTGGAGGGAAAGATGATCACCAGAGCAGAAGGAGACATTGATGATGCCCTGATTGGTGGCAATGCGTCAGCAGAAGTTGCGGATGAGGGCTGTGACAGCACTTCTGTCAGCGGTGTGGACATAGTCCTCAACCACAAACTTCAGGAGACCTCCTACGACAAGAAGTCTTACACAGCCTACATCAAAGACTACATGAAGGCAGTTAAGGCCAAGTTGCAGGAAAGTGCACCTAATAGGGTAGATCCCTTTATGGCTAACGCACCGGCTGAGGTCAAGAAAATCCTAGGCAACATCAAAAACTTTCAGTTTTTCACTGGTGAATCCATGAACCCTGATGGCATGATCGGTCTCCTTGACTTTCGTGAGGATGGAGTCACACCATACATGATCTTCTTCAAGGATGGTCTTGAGATTGAAAAATGCTAAACGTCCCACGCTTCTACAAATCACCCCTCAAACTCTGGCCTCTGCTTGATGGTTTGGCCCGTGGATTAAACCAGTCATTCCCCCTCATCCTTTCCATCAGGACCAGAGGCTCTTTTAACTTCACGAGGCCACTGTTTTCATTTCTTGATTGGCT
>TCONS_00002196
CGGCCTTTTCAGCTGAGTCCACGATCAGGTCACAGCCAGCGCTGTTCGCCTTCTGATATCCCCAGACACAATCCAACAAAATGATCATCTACAAGGACATCATCACTGGGGATGAGATGTTCTCAGACATCTACAAAATCAAAGAGTCTGAGAATGGAATGATGCTTGAAGTGGAGGGAAAGATGATCACCAGAGCAGAAGGAGACATTGATGATGCCCTGATTGGTGGCAATGCGTCAGCAGAAGTTGCGGATGAGGGCTGTGACAGCACTTCTGTCAGCGGTGTGGACATAGTCCTCAACCACAAACTTCAGGAGACCTCCTACGACAAGAAGTCTTACACAGCCTACATCAAAGACTACATGAAGGCTTTCCAGCATGAGAGGCGTCAGGATGTTCAATACCTCAGAGGATGAATGGAAAAACCATTTTGCTAGTTAAGGCCAAGTTGCAGGAAAGTGCACCTAATAGGGTAGATCCCTTTATGGCTAACGCACCGGCTGAGGTCAAGAAAATCCTAGGCAACATCAAAAACTTTCAGTTTTTCACTGGTGAATCCATGAACCCTGATGGCATGATCGGTCTCCTTGACTTTCGTGAGGATGGAGTCACACCATACATGATCTTCTTCAAGGATGGTCTTGAGATTGAAAAATGCTAAACGTCCCACGCTTCTACAAATCACCCCTCAAACTCTGGCCTCTGCTTGATGGTTTGGCCCGTGGATTA
>TCONS_00002198
GCGCCGGCCTTTTCAGCTGAGTCCACGATCAGGTCACAGCCAGCGCTGTTCGCCTTCTGATATCCCCAGACACAATCCAACAAAATGATCATCTACAAGGACATCATCACTGGGGATGAGATGTTCTCAGACATCTACAAAATCAAAGAGTCTGAGAATGGAATGATGCTTGAAGTGGAGGGAAAGATGATCACCAGAGCAGAAGGAGACATTGATGATGCCCTGATTGGTGGCAATGCGTCAGCAGAAGTTGCGGATGAGGGCTGTGACAGCACTTCTGTCAGCGGTGTGGACATAGTCCTCAACCACAAACTTCAGGAGACCTCCTACGACAAGAAGTCTTACACAGCCTACATCAAAGACTACATGAAGGCGTGAGTATGATGTCAACAGGCATGAAATCGCTTGTGAAGAGCATGTTGTACCTTGCAACAGCAGTCTTGTTTAACAGCAAATATAAAGGCCCCCATGTGCTTGAAGCAAAAATGGTGTGATGTCATTTCAAATAAATCAGTCAATAGTGTtatgatataaaatattaatattttaataaatcacaTTTCAGTTTCCAGCATGAGAGGCGTCAGGATGTTCAATACCTCAGAGGATGAATGGAAAAACCATTTTGCTGTCAGTATATTAGGGCCTGTATACTGCTAATATTCCAATCATTTATAATAAAGCTTTTGCATCATTGACAGCTCAGAGTCTTGTATTGTGGCCACCTGGGTTTCAATATGTTACGATGCAAAATGAAAGGTCCCTGCGCTTTCTGCTTGCCCCATGAGTGGCATGTAAGATTGAATTTGGGACTACAAATGTTCTTAACTCTACTTTGATTTTTCAATTCTATAAAGCCTTGTGGTGTActcacttt
>TCONS_00002199
TTGCATCATTGACAGCTCAGAGTCTTGTATTGTGGCCACCTGGGTTTCAATATGTTACGATGCAAAATGAAAGGTCCCTGCGCTTTCTGCTTGCCCCATGAGTGGCATGTAAGATTGAATTTGGGACTACAAAT
>TCONS_00002200
ACAaagtatgtttgttttttattaattggaataaatatttaaagattaataatttgtaatctattttaGGAAACTGTCTATGAAACGGAGGAGATTTGATGTCACACCGTTAGAGGGCGCGCGTGACTCTCAGCGCATATATAAGATGTTCAATCCACGCGCCGGCCTTTTCAGCTGAGTCCACGATCAGGTCACAGCCAGCGCTGTTCGCCTTCTGATATCCCCAGACACAATCCAACAAAATGATCATCTACAAGGACATCATCACTGGGGATGAGATGTTCTCAGACATCTACAAAATCAAAGAGTCTGAGAATGGAATGATGCTTGAAGTGGAGGGAAAGATGATCACCAGAGCAGAAGGAGACATTGATGATGCCCTGATTGGTGGCAATGCGTCAGCAGAAGTTGCGGATGAGGGCTGTGACAGCACTTCTGTCAGCGGTGTGGACATAGTCCTCAACCACAAACTTCAGGAGACCTCCTACGACAAGAAGTCTTACACAGCCTACATCAAAGACTACATGAAGGCTTTCCAGCATGAGAGGCGTCAGGATGTTCAATACCTCAGAGGATGAATGGA

Function

symbol description
tpt1 Predicted to enable calcium ion binding activity. Predicted to be active in cytoplasm. Is expressed in brain; eye; lateral mesoderm; liver; and spinal cord. Orthologous to several human genes including TPT1 (tumor protein, translationally-controlled 1).

GO:

id name namespace
GO:0005737 cytoplasm cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
ko03016 Transfer RNA biogenesis

ZFIN:

id description
ZDB-GENE-990603-10 Predicted to enable calcium ion binding activity. Predicted to be active in cytoplasm. Is expressed in brain; eye; lateral mesoderm; liver; and spinal cord. Orthologous to several human genes including TPT1 (tumor protein, translationally-controlled 1).

Ensembl:

ensembl_id ENSDARG00000085301 ENSDARG00000092693

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00002193 False 1139 mRNA 0.46 6 34707932 34713800
TCONS_00002194 False 816 processed_transcript 0.47 5 34708088 34713707
TCONS_00002195 False 776 mRNA 0.47 6 34708227 34713710
TCONS_00002196 False 729 nonsense_mediated_decay 0.47 7 34708313 34713706
TCONS_00002198 False 877 lncRNA 0.42 3 34711081 34713710
TCONS_00002199 False 134 snoRNA 0.44 1 34711138 34711271
TCONS_00002200 True 583 mRNA 0.44 4 34711342 34713868

Neighbor

gene id symbol gene type direction distance location
XLOC_001332 pibf1 coding downstream 22603 34593490 ~ 34685329 (-)
XLOC_001333 CR339054.6 coding downstream 39581 34668236 ~ 34668351 (-)
XLOC_001331 lmo7b coding downstream 257148 34365845 ~ 34450784 (-)
XLOC_001330 si:dkey-24h22.5 coding downstream 372180 34321574 ~ 34335752 (-)
XLOC_001329 NA coding downstream 998593 33705097 ~ 33709339 (-)
XLOC_001338 NA coding upstream 14037 34727905 ~ 34728207 (-)
XLOC_001339 CR339054.5 coding upstream 29591 34743459 ~ 34748322 (-)
XLOC_001340 si:dkey-151m22.8 coding upstream 34827 34748695 ~ 34750169 (-)
XLOC_001341 BX897691.1 coding upstream 240829 34954697 ~ 35113974 (-)
XLOC_001342 NA coding upstream 270687 34984555 ~ 34997788 (-)
XLOC_001327 NA non-coding downstream 1041024 33624256 ~ 33666908 (-)
XLOC_001324 NA non-coding downstream 1379185 33324955 ~ 33328747 (-)
XLOC_001323 CU929192.1 non-coding downstream 1706259 33001559 ~ 33001673 (-)
XLOC_001343 NA non-coding upstream 271710 34985578 ~ 34988958 (-)
XLOC_001344 NA non-coding upstream 519206 35233074 ~ 35278026 (-)

Expression


Co-expression Network