XLOC_001329


Basic Information

Item Value
gene id XLOC_001329
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 33705097 ~ 33709339 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00002960
GTAATTTTGCAAACGGTAGATGAAGCTGGATATCATTGAGCTGGACCTAAACATCGCTTCAACGGCACTTGTGATTATCGTCAGCATAACAGCGATTCTTGTGCTTGGCACACTCATTTGtttcctTCCAGGCACAAGCATATGGTGATCAATCCACACATTCCATAATCCCAGCaataaaagattttcaaacagtTATCAAAATGGACCAGAGGTTGTTACTGAGAGTCATCATCGCTGAAGATGATATAACATTGTCATCACCCACCACAACATTAGACACTGAGGGCAGCACAGCAGACACTGAGATCCTGTCGCCTGTAGGAGCATCACCATCGCTAAGACAACAGTGGCCAGAGTTCTTTGACATACCCAATTAGCACATATCATAGAGAGACAGGTGTTTGCTGAGTTTAATAGAATCGCCAGTAAGAATCTTGAGGGAGACTTCTTTGAGGCTTTGGACCAGTATGCCCCACGTTTCATTGAACTTTTCAAAACAAAATAGGGAACTGTTGGCCAGAAACTCAGGGAGCTGATGCAGCACATGAGCTGGATGACACCAGACGACACAGTACTTCGCTCTGTTGTCCTCAAAGGCATTCCCATTTTACTCGGTGATGACTCCAGTGAATTCTACAAGACCTGCTCTGATACAGAGAGAGACGAGGCCCTAGAATGCATCACTGTAGTCCTCACGAGGGTCAAAGCTCAGTGGACCTCCAGCCCATCTCCACTGCCATCATTCTGGAGGGAGGTATTCTCATGGATCATGTTAAAAACTTGCCTCAGGCAGTTTGTCCTTTGTTTCGTCTTACATATGCATTGCATTTGGATACCCAAAATGCATGGCAAATACACTCAACTTCATTCAGACTGTGATGCTTGGACTGGTAAAGAAAAACCTCCCACCAAAACTGTTAACTCCTGAAGAACAGTCTTCTGGGTTAGAACAGTAAAGAGCCGTTGGCTGTCAGATAGCACTTTGTAAGCTTTGCAGCCATTAATGTTCTCCCTTTTATCAGAGAAAGTTTGATGCTTTCATGGAACTGTTCTCGCTTATTTACGTtctcaatgg
>TCONS_00002961
GGTAGATGAAGCTGGATATCATTGAGCTGGACCTAAACATCGCTTCAACGGCACTTGTGATTATCGTCAGCATAACAGCGATTCTTGTGCTTGGCACACTCATTTGtttcctTCCAGGCACAAGCATATGGTGATCAATCCACACATTCCATAATCCCAGCaataaaagATACTGTGGGTTCGATTTATAGTCCATCATACCCAGGACAACAGTTCCCTTGATGTCTAACCACATAAGCGAGTCATTTACCATTTACTTTTTGTACTGCTGTATTCACTTGTCTTAAAGAAGTTCATTGATTAAAAGCTTGATAATTAGATTTTTGCAAGGATTTAGTTTTTCCTATAGCTCTGGTATTTCAAATCTGATACTGCATTtgagtgtttttgtctttttatgttgctaggcttGATGCTAAAAttatcttttctttcttttcagattttcaaacagtTATCAAAATGGA

Function

GO:

id name namespace
GO:0001732 formation of cytoplasmic translation initiation complex biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0030163 protein catabolic process biological_process
GO:0009057 macromolecule catabolic process biological_process
GO:0043632 modification-dependent macromolecule catabolic process biological_process
GO:0006413 translational initiation biological_process
GO:0044257 cellular protein catabolic process biological_process
GO:0044265 cellular macromolecule catabolic process biological_process
GO:0010498 proteasomal protein catabolic process biological_process
GO:0010499 proteasomal ubiquitin-independent protein catabolic process biological_process
GO:0019941 modification-dependent protein catabolic process biological_process
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0051603 proteolysis involved in cellular protein catabolic process biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0002183 cytoplasmic translational initiation biological_process
GO:0019773 proteasome core complex, alpha-subunit complex cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:0005838 proteasome regulatory particle cellular_component
GO:0005839 proteasome core complex cellular_component
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:1905368 peptidase complex cellular_component
GO:1905369 endopeptidase complex cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005634 nucleus cellular_component
GO:0031390 Ctf18 RFC-like complex cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0000502 proteasome complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0070993 translation preinitiation complex cellular_component
GO:0008135 translation factor activity, RNA binding molecular_function
GO:0070003 threonine-type peptidase activity molecular_function
GO:0004298 threonine-type endopeptidase activity molecular_function
GO:0003743 translation initiation factor activity molecular_function
GO:0003755 peptidyl-prolyl cis-trans isomerase activity molecular_function
GO:0016859 cis-trans isomerase activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00002960 False 1078 lncRNA 0.44 7 33705097 33709339
TCONS_00002961 True 467 lncRNA 0.36 3 33707774 33709325

Neighbor

gene id symbol gene type direction distance location
XLOC_001327 NA coding downstream 38189 33624256 ~ 33666908 (-)
XLOC_001328 cldng coding downstream 57928 33645044 ~ 33647169 (-)
XLOC_001326 creb1a coding downstream 147182 33547532 ~ 33557915 (-)
XLOC_001325 gyg2 coding downstream 324757 33336923 ~ 33380340 (-)
XLOC_001324 NA coding downstream 376350 33324955 ~ 33328747 (-)
XLOC_001330 si:dkey-24h22.5 coding upstream 612235 34321574 ~ 34335752 (-)
XLOC_001331 lmo7b coding upstream 656506 34365845 ~ 34450784 (-)
XLOC_001332 pibf1 coding upstream 884151 34593490 ~ 34685329 (-)
XLOC_001333 CR339054.6 coding upstream 958897 34668236 ~ 34668351 (-)
XLOC_001334 tpt1 coding upstream 998593 34707932 ~ 34713868 (-)
XLOC_001323 CU929192.1 non-coding downstream 703424 33001559 ~ 33001673 (-)
XLOC_001322 NA non-coding downstream 1056368 32591816 ~ 32648729 (-)
XLOC_001321 CR925879.1 non-coding downstream 1386186 32316335 ~ 32318911 (-)
XLOC_001335 CR339054.3 non-coding upstream 999158 34708497 ~ 34708627 (-)
XLOC_001336 CR339054.1 non-coding upstream 1002593 34711932 ~ 34712003 (-)
XLOC_001337 CR339054.2 non-coding upstream 1003174 34712513 ~ 34712583 (-)
XLOC_001338 NA non-coding upstream 1018566 34727905 ~ 34728207 (-)

Expression


Co-expression Network