RNA id: TCONS_00002961


Basic Information

Item Value
RNA id TCONS_00002961
length 467
lncRNA type intronic
GC content 0.36
exon number 3
gene id XLOC_001329
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 33705097 ~ 33709339 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGTAGATGAAGCTGGATATCATTGAGCTGGACCTAAACATCGCTTCAACGGCACTTGTGATTATCGTCAGCATAACAGCGATTCTTGTGCTTGGCACACTCATTTGtttcctTCCAGGCACAAGCATATGGTGATCAATCCACACATTCCATAATCCCAGCaataaaagATACTGTGGGTTCGATTTATAGTCCATCATACCCAGGACAACAGTTCCCTTGATGTCTAACCACATAAGCGAGTCATTTACCATTTACTTTTTGTACTGCTGTATTCACTTGTCTTAAAGAAGTTCATTGATTAAAAGCTTGATAATTAGATTTTTGCAAGGATTTAGTTTTTCCTATAGCTCTGGTATTTCAAATCTGATACTGCATTtgagtgtttttgtctttttatgttgctaggcttGATGCTAAAAttatcttttctttcttttcagattttcaaacagtTATCAAAATGGA

Function

GO:

id name namespace
GO:0001732 formation of cytoplasmic translation initiation complex biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0030163 protein catabolic process biological_process
GO:0009057 macromolecule catabolic process biological_process
GO:0043632 modification-dependent macromolecule catabolic process biological_process
GO:0006413 translational initiation biological_process
GO:0044257 cellular protein catabolic process biological_process
GO:0044265 cellular macromolecule catabolic process biological_process
GO:0010498 proteasomal protein catabolic process biological_process
GO:0010499 proteasomal ubiquitin-independent protein catabolic process biological_process
GO:0019941 modification-dependent protein catabolic process biological_process
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0051603 proteolysis involved in cellular protein catabolic process biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0002183 cytoplasmic translational initiation biological_process
GO:0019773 proteasome core complex, alpha-subunit complex cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:0005838 proteasome regulatory particle cellular_component
GO:0005839 proteasome core complex cellular_component
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:1905368 peptidase complex cellular_component
GO:1905369 endopeptidase complex cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005634 nucleus cellular_component
GO:0031390 Ctf18 RFC-like complex cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0000502 proteasome complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0070993 translation preinitiation complex cellular_component
GO:0008135 translation factor activity, RNA binding molecular_function
GO:0070003 threonine-type peptidase activity molecular_function
GO:0004298 threonine-type endopeptidase activity molecular_function
GO:0003743 translation initiation factor activity molecular_function
GO:0003755 peptidyl-prolyl cis-trans isomerase activity molecular_function
GO:0016859 cis-trans isomerase activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003435 lncRNA downstream 40866 33624256 ~ 33666908 (-) True XLOC_001327
TCONS_00002174 lncRNA downstream 327780 33375207 ~ 33379994 (-) False XLOC_001325
TCONS_00002175 lncRNA downstream 327780 33375492 ~ 33379994 (-) True XLOC_001325
TCONS_00002173 lncRNA downstream 327783 33365183 ~ 33379991 (-) False XLOC_001325
TCONS_00003434 lncRNA downstream 379027 33324955 ~ 33328747 (-) True XLOC_001324
TCONS_00002184 lncRNA upstream 667084 34376409 ~ 34381438 (-) False XLOC_001331
TCONS_00002198 lncRNA upstream 1001756 34711081 ~ 34713710 (-) False XLOC_001334
TCONS_00003436 lncRNA upstream 1018580 34727905 ~ 34728207 (-) True XLOC_001338
TCONS_00003437 lncRNA upstream 1275230 34984555 ~ 34985057 (-) False XLOC_001342
TCONS_00003438 lncRNA upstream 1275230 34984555 ~ 34997788 (-) True XLOC_001342
TCONS_00002178 mRNA downstream 60605 33645044 ~ 33647169 (-) False XLOC_001328
TCONS_00002180 mRNA downstream 60636 33645488 ~ 33647138 (-) True XLOC_001328
TCONS_00002179 mRNA downstream 61807 33645331 ~ 33645967 (-) False XLOC_001328
TCONS_00002176 mRNA downstream 149859 33547532 ~ 33557915 (-) False XLOC_001326
TCONS_00002177 mRNA downstream 151346 33548388 ~ 33556428 (-) True XLOC_001326
TCONS_00002181 mRNA upstream 612249 34321574 ~ 34335752 (-) True XLOC_001330
TCONS_00002182 mRNA upstream 656520 34365845 ~ 34450784 (-) False XLOC_001331
TCONS_00002183 mRNA upstream 657524 34366849 ~ 34447515 (-) False XLOC_001331
TCONS_00002185 mRNA upstream 718997 34428322 ~ 34450622 (-) False XLOC_001331
TCONS_00002187 mRNA upstream 884165 34593490 ~ 34612613 (-) False XLOC_001332
TCONS_00002172 other downstream 327806 33365183 ~ 33379968 (-) False XLOC_001325
TCONS_00002166 other downstream 706101 33001559 ~ 33001673 (-) True XLOC_001323
TCONS_00002165 other downstream 1388863 32316335 ~ 32318911 (-) True XLOC_001321
TCONS_00002139 other downstream 2945520 30736570 ~ 30762254 (-) True XLOC_001306
TCONS_00002135 other downstream 3066238 30618480 ~ 30641536 (-) True XLOC_001304
TCONS_00002186 other upstream 737283 34446608 ~ 34450574 (-) True XLOC_001331
TCONS_00002191 other upstream 958911 34668236 ~ 34668351 (-) True XLOC_001333
TCONS_00002192 other upstream 970066 34679391 ~ 34681969 (-) True XLOC_001332
TCONS_00002194 other upstream 998763 34708088 ~ 34713707 (-) False XLOC_001334
TCONS_00002196 other upstream 998988 34708313 ~ 34713706 (-) False XLOC_001334

Expression Profile

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