XLOC_001328 (cldng)


Basic Information

Item Value
gene id XLOC_001328
gene name cldng
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 33645044 ~ 33647169 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00002178
ATTTAAGGGATCGCACGAGAGTGTTTGTCAGTATGGCTACTTCCTAAAGGAGTTGATTTCTTGCacgtaattttgttttaatgtgtcTTGGTTTTTAGTGCTTTGTTTACTGTGAGAGAAATCAGTTGCAAGCTCATCTGTAGGTCACAGACATGTCTACTGGCTTGCAGCTCCTTGGAACAACACTAGGCACTCTTGGCTGGCTGGGCATAATTATATCATGTGCAATCCCTCTATGGCGTGTGACTGCCTTCATTGGAAACAACATTGTGACTGCACAGACGATGTGGGAAGGGCTGTGGATGAGCTGTGTGGTGCAGAGTACAGGCCAAATGCAGTGTAAAGTGTATGACTCCATGCTGGCTCTTGCCCAAGATCTGCAGGCCTCTCGAGCTATCCTTGTCATTTCTGCTATTGTTGGTTTAATTGCcatgtttgcaagttttgctgGTGGTAAATGTACTAATTGCCTGGCGGATAACTCCGCAAAGGCTCTGGTTGCTACAACAGGAGGCGTTGCCTTCATAATTGCAGGGATCTTGGGTTTGGTGCCACCTAGCTGGACCGCTAATACAATCATCAGAGACTTTTACAATCCTCTCGTAGCTGAAGCACAGAAGAGGGAGTTTGGAGCAGCCATCTTCATCTGCTGGGGGGCAGCAGTGCTCCTGGTTATTGGTGGAGGTCTCCTCTGCAGCTCTTACCCAAAAGGAAGAACCTCCAGCAGGGGTCGGTATACACCAGCTTCTCAAAATGGAAGAGAGCGCTCGGAGTATGTGTGACTGAAGGATGTCTGTTTGAAGAAATTATAGATTTGTTTTAGGTTTTTATCTATTTAAATGTCTGTCTGAGATCGTCTTTGTAAAGCAGAGATGAAGTGATCAATTGagctaataaaacacattttattcaacAGAGGGCAGTGTTTCATAACTTTAATTTTATACCTGTTTGAGGATGTACCCTTTGCAAACCAAAGAAGGCAATCTGCTGAAGTATGTTGAGCTAATTATGGGATGTTCTACCAGAAACCTTTTTaacttaaaacaaataataataaaagaaagtgATATGG
>TCONS_00002179
CATGTCTACTGGCTTGCAGCTCCTTGGAACAACACTAGGCACTCTTGGCTGGCTGGGCATAATTATATCATGTGCAATCCCTCTATGGCGTGTGACTGCCTTCATTGGAAACAACATTGTGACTGCACAGACGATGTGGGAAGGGCTGTGGATGAGCTGTGTGGTGCAGAGTACAGGCCAAATGCAGTGTAAAGTGTATGACTCCATGCTGGCTCTTGCCCAAGATCTGCAGGCCTCTCGAGCTATCCTTGTCATTTCTGCTATTGTTGGTTTAATTGCcatgtttgcaagttttgctgGTGGTAAATGTACTAATTGCCTGGCGGATAACTCCGCAAAGGCTCTGGTTGCTACAACAGGAGGCGTTGCCTTCATAATTGCAGGGATCTTGGGTTTGGTGCCACCTAGCTGGACCGCTAATACAATCATCAGAGACTTTTACAATCCTCTCGTAGCTGAAGCACAGAAGAGGGAGTTTGGAGCAGCCATCTTCATCTGCTGGGGGGCAGCAGTGCTCCTGGTTATTGGTGGAGGTCTCCTCTGCAGCTCTTACCCAAAAGGAAGAACCTCCAGCAGGGGTCGGTATACACCAGCTTCTCAAAATGGAAGAGAGCGCTCGGAGTATGTGTGACTGAAG
>TCONS_00002180
TATGGCTACTTCCTAAAGGAGTTGATTTCTTGCacgtaattttgttttaatgtgtcTTGGTTTTTAGTGCTTTGTTTACTGTGAGAGAAATCAGTTGCAAGCTCATCTGTAGGTCACAGtttcccCTTCGTTTATTGGCTTTTCACTTTTTTTGCAGACATGTCTACTGGCTTGCAGCTCCTTGGAACAACACTAGGCACTCTTGGCTGGCTGGGCATAATTATATCATGTGCAATCCCTCTATGGCGTGTGACTGCCTTCATTGGAAACAACATTGTGACTGCACAGACGATGTGGGAAGGGCTGTGGATGAGCTGTGTGGTGCAGAGTACAGGCCAAATGCAGTGTAAAGTGTATGACTCCATGCTGGCTCTTGCCCAAGATCTGCAGGCCTCTCGAGCTATCCTTGTCATTTCTGCTATTGTTGGTTTAATTGCcatgtttgcaagttttgctgGTGGTAAATGTACTAATTGCCTGGCGGATAACTCCGCAAAGGCTCTGGTTGCTACAACAGGAGGCGTTGCCTTCATAATTGCAGGGATCTTGGGTTTGGTGCCACCTAGCTGGACCGCTAATACAATCATCAGAGACTTTTACAATCCTCTCGTAGCTGAAGCACAGAAGAGGGAGTTTGG

Function

symbol description
cldng Predicted to enable identical protein binding activity. Predicted to be involved in bicellular tight junction assembly and calcium-independent cell-cell adhesion via plasma membrane cell-adhesion molecules. Predicted to be located in cell junction and membrane. Predicted to be integral component of membrane. Predicted to be active in bicellular tight junction and plasma membrane. Is expressed in several structures, including digestive system; gonad; hematopoietic system; kidney; and mesoderm. Human ortholog(s) of this gene implicated in autosomal recessive nonsyndromic deafness 116. Orthologous to human CLDN6 (claudin 6) and CLDN9 (claudin 9).

GO:

id name namespace
GO:0070830 bicellular tight junction assembly biological_process
GO:0007155 cell adhesion biological_process
GO:0016338 calcium-independent cell-cell adhesion via plasma membrane cell-adhesion molecules biological_process
GO:0005886 plasma membrane cellular_component
GO:0005923 bicellular tight junction cellular_component
GO:0030054 cell junction cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0042802 identical protein binding molecular_function
GO:0005198 structural molecule activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-010328-7 Predicted to enable identical protein binding activity. Predicted to be involved in bicellular tight junction assembly and calcium-independent cell-cell adhesion via plasma membrane cell-adhesion molecules. Predicted to be located in cell junction and membrane. Predicted to be integral component of membrane. Predicted to be active in bicellular tight junction and plasma membrane. Is expressed in several structures, including digestive system; gonad; hematopoietic system; kidney; and mesoderm. Human ortholog(s) of this gene implicated in autosomal recessive nonsyndromic deafness 116. Orthologous to human CLDN6 (claudin 6) and CLDN9 (claudin 9).

Ensembl:

ensembl_id ENSDARG00000003701

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00002178 False 1075 mRNA 0.43 2 33645044 33647169
TCONS_00002179 False 637 mRNA 0.50 1 33645331 33645967
TCONS_00002180 True 638 mRNA 0.46 2 33645488 33647138

Neighbor

gene id symbol gene type direction distance location
XLOC_001326 creb1a coding downstream 87129 33547532 ~ 33557915 (-)
XLOC_001325 gyg2 coding downstream 264704 33336923 ~ 33380340 (-)
XLOC_001324 NA coding downstream 316297 33324955 ~ 33328747 (-)
XLOC_001323 CU929192.1 coding downstream 643371 33001559 ~ 33001673 (-)
XLOC_001322 NA coding downstream 996315 32591816 ~ 32648729 (-)
XLOC_001329 NA coding upstream 57928 33705097 ~ 33709339 (-)
XLOC_001330 si:dkey-24h22.5 coding upstream 674405 34321574 ~ 34335752 (-)
XLOC_001331 lmo7b coding upstream 718676 34365845 ~ 34450784 (-)
XLOC_001332 pibf1 coding upstream 946321 34593490 ~ 34685329 (-)
XLOC_001333 CR339054.6 coding upstream 1021067 34668236 ~ 34668351 (-)
XLOC_001321 CR925879.1 non-coding downstream 1326133 32316335 ~ 32318911 (-)
XLOC_001317 NA non-coding downstream 2044196 31598318 ~ 31600848 (-)
XLOC_001335 CR339054.3 non-coding upstream 1061328 34708497 ~ 34708627 (-)
XLOC_001336 CR339054.1 non-coding upstream 1064763 34711932 ~ 34712003 (-)
XLOC_001337 CR339054.2 non-coding upstream 1065344 34712513 ~ 34712583 (-)

Expression


Co-expression Network