RNA id: TCONS_00003437


Basic Information

Item Value
RNA id TCONS_00003437
length 417
lncRNA type intronic
GC content 0.36
exon number 2
gene id XLOC_001342
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 34984555 ~ 34997788 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

aaaatcaacaaacaaatgtggcaaaataaatcagTACCTGGTGAAGCAGAAGACCGACCTGCTTCTTCCTCCTCATCTCTGTCTGGACTCTGATCTGTTGACCACTCTTAAATACACTTTCCATTCCTGGGACATTTCAGATCAACAGCAATCTATGTAGAGAAGGTTTTGAAAGGCTGGAAACATTTTAACGCTGACTTTTTGTGACTAATCCTTTTGTAAATAAGGCAAGCAACCATAAAGTAAGGGCAGCAATATTAGCCCTCCCgtcaaatattttttcttttttcaaatatttctcaagcaATATTTCAtcgagcaaggcaattttcaccatatttctgattatttttgtttcttcCAGAGAAGGTCctagttgttttatttaaaatattatgtacttcaatcatggcaaag

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003436 lncRNA downstream 256348 34727905 ~ 34728207 (-) True XLOC_001338
TCONS_00002198 lncRNA downstream 270845 34711081 ~ 34713710 (-) False XLOC_001334
TCONS_00002184 lncRNA downstream 603117 34376409 ~ 34381438 (-) False XLOC_001331
TCONS_00002960 lncRNA downstream 1275216 33705097 ~ 33709339 (-) False XLOC_001329
TCONS_00002961 lncRNA downstream 1275230 33707774 ~ 33709325 (-) True XLOC_001329
TCONS_00003439 lncRNA upstream 521 34985578 ~ 34988958 (-) True XLOC_001343
TCONS_00002962 lncRNA upstream 248017 35233074 ~ 35234582 (-) False XLOC_001344
TCONS_00003440 lncRNA upstream 248466 35233523 ~ 35278026 (-) True XLOC_001344
TCONS_00002963 lncRNA upstream 347247 35332304 ~ 35335407 (-) False XLOC_001346
TCONS_00002213 lncRNA upstream 629965 35615022 ~ 35617911 (-) True XLOC_001347
TCONS_00002205 mRNA downstream 234386 34748695 ~ 34750169 (-) True XLOC_001340
TCONS_00002200 mRNA downstream 270687 34711342 ~ 34713868 (-) True XLOC_001334
TCONS_00002193 mRNA downstream 270755 34707932 ~ 34713800 (-) False XLOC_001334
TCONS_00002195 mRNA downstream 270845 34708227 ~ 34713710 (-) False XLOC_001334
TCONS_00002189 mRNA downstream 299226 34616054 ~ 34685329 (-) False XLOC_001332
TCONS_00002207 mRNA upstream 125208 35110265 ~ 35113974 (-) True XLOC_001341
TCONS_00002212 mRNA upstream 629032 35614089 ~ 35653560 (-) False XLOC_001347
TCONS_00002214 mRNA upstream 677417 35662474 ~ 35695724 (-) False XLOC_001348
TCONS_00002215 mRNA upstream 680716 35665773 ~ 35694978 (-) False XLOC_001348
TCONS_00002216 mRNA upstream 680716 35665773 ~ 35695614 (-) False XLOC_001348
TCONS_00002203 other downstream 236233 34743459 ~ 34748322 (-) False XLOC_001339
TCONS_00002204 other downstream 237438 34746069 ~ 34747117 (-) True XLOC_001339
TCONS_00002194 other downstream 270848 34708088 ~ 34713707 (-) False XLOC_001334
TCONS_00002196 other downstream 270849 34708313 ~ 34713706 (-) False XLOC_001334
TCONS_00002202 other downstream 271972 34712513 ~ 34712583 (-) True XLOC_001337
TCONS_00002208 other upstream 332297 35317354 ~ 35318209 (-) True XLOC_001345
TCONS_00002209 other upstream 347867 35332924 ~ 35335170 (-) False XLOC_001346
TCONS_00002210 other upstream 347943 35333000 ~ 35335093 (-) False XLOC_001346
TCONS_00002211 other upstream 347943 35333000 ~ 35335416 (-) True XLOC_001346
TCONS_00002233 other upstream 2378815 37363872 ~ 37363990 (-) True XLOC_001360