RNA id: TCONS_00002963


Basic Information

Item Value
RNA id TCONS_00002963
length 1520
lncRNA type inter_gene
GC content 0.38
exon number 7
gene id XLOC_001346
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 35332304 ~ 35335416 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GATTGACACAGTCAGTGACGTAAGAAGATAAACCAAGAAGAACAACCAAGAGATACAGAGACAGTCACAAAGACACTGAATATTAAAAGTTATAAAATACAGAGAAATGCTGAGAAACTACACAGATGAAGAGCACCTATGATCCAAGAAGGTGAAGATAAGAAGACAAGAAAGAAATGGAagaaacagaaatgATCTTCTGTAATGTTGCTGTTTCTCTCCTACTGCTATCGCTTAGTGTTAGCGGCACCTCAAATGgGACTGAGCCGCACTGTGATGTAAAGCTGAAAGTGCCACGACAAACAATCTTTAAAGCTCGTATTATGACACAGCTAAAGATAAACTGTACTGTAACTCATAATGGATGTCAGTGGAACCCAATAATCTCATGGTGCAAAATCTATGGAGATCACTGTAAAGCTTTAAATCACTCAGACCTTATAAAGATGGAGTGTAGAAATACAGCACAGCATGAAGGGATGGCTTTCCTGATTTTCCAGAACATCACAATGGAGAATTCAGGTTCATACAGATGTACACATGGTGACACGTCTGTAAGCCATGCTATTAATGTTACCATTACAGGAAATGGTGAAGATGAATTTTCACACAATCAAAGTAACAAAATTCCAGACAATGGTCTGAAGTGGTTGTGGCCATATGTGTACATCTGCAGTGGAATAGCGGCGCTGGTGATCATCATTATAACCATAACATTATTTGTCTTCAATTGCCAAGACACAAAATCCAAAACAGAAGAACTGACAAATAAAAATCAGTACATGGAAACTCAAAGTAGTGACCtgcttcctcctcctcttcctcatccCCGTCACGACACCCGCTCTCTTTCACAGCAGAGAGGGTCTGCTTTAGATCGTGGCTCTGAAATTCCACCGGGCAGAGGAACATCATCAGCTGGAAGAGTCAAAGAGAGAAGCCATCACACTGTCAGCGCAGGAAGAGGAGAAGATGATAATGCTCTGGTCTATGCCTCTTTGAATCACCAGGCTGTGCCGAAAGTGCATAGAAAAACTGCAAGGCAAGAACCAGAACTTTCAGAATATGCTGCAGTCCGATTCCGGTGATTTTAAGGATTGTTTACTTAGACACTTTGAAAAAAGACTATTGAGAAATGACCAGTTGGGAAATGAGGTCattcacttattattttaaaCGTTGCTATTATAATTTAAACACTCAAGGAGCAAGGTGTTTAGTAAGTGTTTTGGCCACCTTTTTCATTTTAGATCATATGACAGCCGTTGATTGCTGTTATATTAAAGGACTGGCAtgcattaacaaaaaaatattctcACGTTTGCAATAATAATTCAAGCTCTCTCATATGCCTtactaaaatacatacagtatgaaCATCTTTAACAACAATATTATGGAAAAttgtgtaataaagtaataaattgcttAGTAAAAAACAATGGCTTGCACAATGGATCACCATAAATGtaactttgttttattaaacattagGATCGATTTCTTATCTTTTCATGTGT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003440 lncRNA downstream 54278 35233523 ~ 35278026 (-) True XLOC_001344
TCONS_00002962 lncRNA downstream 97722 35233074 ~ 35234582 (-) False XLOC_001344
TCONS_00003438 lncRNA downstream 334516 34984555 ~ 34997788 (-) True XLOC_001342
TCONS_00003439 lncRNA downstream 343346 34985578 ~ 34988958 (-) True XLOC_001343
TCONS_00003437 lncRNA downstream 347247 34984555 ~ 34985057 (-) False XLOC_001342
TCONS_00002213 lncRNA upstream 279615 35615022 ~ 35617911 (-) True XLOC_001347
TCONS_00002965 lncRNA upstream 616788 35952195 ~ 35953194 (-) False XLOC_001350
TCONS_00002964 lncRNA upstream 616788 35952195 ~ 35953194 (-) True XLOC_001350
TCONS_00003441 lncRNA upstream 618571 35953978 ~ 35955838 (-) True XLOC_001351
TCONS_00003442 lncRNA upstream 637213 35972620 ~ 35973783 (-) True XLOC_001352
TCONS_00002206 mRNA downstream 218330 34954697 ~ 35113974 (-) False XLOC_001341
TCONS_00002207 mRNA downstream 218330 35110265 ~ 35113974 (-) True XLOC_001341
TCONS_00002205 mRNA downstream 582135 34748695 ~ 34750169 (-) True XLOC_001340
TCONS_00002200 mRNA downstream 618436 34711342 ~ 34713868 (-) True XLOC_001334
TCONS_00002195 mRNA downstream 618594 34708227 ~ 34713710 (-) False XLOC_001334
TCONS_00002212 mRNA upstream 278682 35614089 ~ 35653560 (-) False XLOC_001347
TCONS_00002214 mRNA upstream 327067 35662474 ~ 35695724 (-) False XLOC_001348
TCONS_00002215 mRNA upstream 330366 35665773 ~ 35694978 (-) False XLOC_001348
TCONS_00002216 mRNA upstream 330366 35665773 ~ 35695614 (-) False XLOC_001348
TCONS_00002217 mRNA upstream 355548 35690955 ~ 35695615 (-) True XLOC_001348
TCONS_00002208 other downstream 14095 35317354 ~ 35318209 (-) True XLOC_001345
TCONS_00002203 other downstream 583982 34743459 ~ 34748322 (-) False XLOC_001339
TCONS_00002204 other downstream 585187 34746069 ~ 34747117 (-) True XLOC_001339
TCONS_00002202 other downstream 619721 34712513 ~ 34712583 (-) True XLOC_001337
TCONS_00002201 other downstream 620301 34711932 ~ 34712003 (-) True XLOC_001336
TCONS_00002233 other upstream 2028465 37363872 ~ 37363990 (-) True XLOC_001360
TCONS_00002252 other upstream 3315753 38651160 ~ 38665973 (-) False XLOC_001370
TCONS_00002253 other upstream 3322220 38657627 ~ 38709154 (-) False XLOC_001370
TCONS_00002260 other upstream 3473282 38808689 ~ 38813418 (-) False XLOC_001371
TCONS_00002265 other upstream 4038395 39373802 ~ 39373911 (-) True XLOC_001373

Expression Profile

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