RNA id: TCONS_00002200


Basic Information

Item Value
RNA id TCONS_00002200
length 583
RNA type mRNA
GC content 0.44
exon number 4
gene id XLOC_001334
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 34707932 ~ 34713868 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACAaagtatgtttgttttttattaattggaataaatatttaaagattaataatttgtaatctattttaGGAAACTGTCTATGAAACGGAGGAGATTTGATGTCACACCGTTAGAGGGCGCGCGTGACTCTCAGCGCATATATAAGATGTTCAATCCACGCGCCGGCCTTTTCAGCTGAGTCCACGATCAGGTCACAGCCAGCGCTGTTCGCCTTCTGATATCCCCAGACACAATCCAACAAAATGATCATCTACAAGGACATCATCACTGGGGATGAGATGTTCTCAGACATCTACAAAATCAAAGAGTCTGAGAATGGAATGATGCTTGAAGTGGAGGGAAAGATGATCACCAGAGCAGAAGGAGACATTGATGATGCCCTGATTGGTGGCAATGCGTCAGCAGAAGTTGCGGATGAGGGCTGTGACAGCACTTCTGTCAGCGGTGTGGACATAGTCCTCAACCACAAACTTCAGGAGACCTCCTACGACAAGAAGTCTTACACAGCCTACATCAAAGACTACATGAAGGCTTTCCAGCATGAGAGGCGTCAGGATGTTCAATACCTCAGAGGATGAATGGA

Function

GO:

id name namespace
GO:0005737 cytoplasm cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
ko03016 Transfer RNA biogenesis

ZFIN:

id description
ZDB-GENE-990603-10 Predicted to enable calcium ion binding activity. Predicted to be active in cytoplasm. Is expressed in brain; eye; lateral mesoderm; liver; and spinal cord. Orthologous to several human genes including TPT1 (tumor protein, translationally-controlled 1).

Ensembl:

ensembl_id ENSDART00000122137

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00002184 lncRNA downstream 329904 34376409 ~ 34381438 (-) False XLOC_001331
TCONS_00002960 lncRNA downstream 1002003 33705097 ~ 33709339 (-) False XLOC_001329
TCONS_00002961 lncRNA downstream 1002017 33707774 ~ 33709325 (-) True XLOC_001329
TCONS_00003435 lncRNA downstream 1044434 33624256 ~ 33666908 (-) True XLOC_001327
TCONS_00002175 lncRNA downstream 1331348 33375492 ~ 33379994 (-) True XLOC_001325
TCONS_00003436 lncRNA upstream 14037 34727905 ~ 34728207 (-) True XLOC_001338
TCONS_00003437 lncRNA upstream 270687 34984555 ~ 34985057 (-) False XLOC_001342
TCONS_00003438 lncRNA upstream 270687 34984555 ~ 34997788 (-) True XLOC_001342
TCONS_00003439 lncRNA upstream 271710 34985578 ~ 34988958 (-) True XLOC_001343
TCONS_00002962 lncRNA upstream 519206 35233074 ~ 35234582 (-) False XLOC_001344
TCONS_00002189 mRNA downstream 26013 34616054 ~ 34685329 (-) False XLOC_001332
TCONS_00002190 mRNA downstream 26013 34616056 ~ 34685329 (-) False XLOC_001332
TCONS_00002188 mRNA downstream 26335 34612321 ~ 34685007 (-) False XLOC_001332
TCONS_00002187 mRNA downstream 98729 34593490 ~ 34612613 (-) False XLOC_001332
TCONS_00002185 mRNA downstream 260720 34428322 ~ 34450622 (-) False XLOC_001331
TCONS_00002205 mRNA upstream 34827 34748695 ~ 34750169 (-) True XLOC_001340
TCONS_00002206 mRNA upstream 240829 34954697 ~ 35113974 (-) False XLOC_001341
TCONS_00002207 mRNA upstream 396397 35110265 ~ 35113974 (-) True XLOC_001341
TCONS_00002212 mRNA upstream 900221 35614089 ~ 35653560 (-) False XLOC_001347
TCONS_00002214 mRNA upstream 948606 35662474 ~ 35695724 (-) False XLOC_001348
TCONS_00002199 other downstream 71 34711138 ~ 34711271 (-) False XLOC_001334
TCONS_00002197 other downstream 2715 34708497 ~ 34708627 (-) True XLOC_001335
TCONS_00002192 other downstream 29373 34679391 ~ 34681969 (-) True XLOC_001332
TCONS_00002191 other downstream 42991 34668236 ~ 34668351 (-) True XLOC_001333
TCONS_00002186 other downstream 260768 34446608 ~ 34450574 (-) True XLOC_001331
TCONS_00002203 other upstream 29591 34743459 ~ 34748322 (-) False XLOC_001339
TCONS_00002204 other upstream 32201 34746069 ~ 34747117 (-) True XLOC_001339
TCONS_00002208 other upstream 603486 35317354 ~ 35318209 (-) True XLOC_001345
TCONS_00002209 other upstream 619056 35332924 ~ 35335170 (-) False XLOC_001346
TCONS_00002210 other upstream 619132 35333000 ~ 35335093 (-) False XLOC_001346

Expression Profile

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