RNA id: TCONS_00002188


Basic Information

Item Value
RNA id TCONS_00002188
length 6168
RNA type mRNA
GC content 0.39
exon number 17
gene id XLOC_001332
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 34593490 ~ 34685329 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTGACAGACGATGCCACCCAAGAAGCCAAAGGACGCCAAGGCAAACATTTCCAGCTCCATCGAGTCTGAGGACATCAGTCTTGAGACAACGGTCCCTACAGAGGACATCTCGTCCTCGGATGAGAAAGATGGCGCAGGGAAAGTCACAAAACAGCTCCTGGAAAGAAAAGAACTACTTCATAACCTTCAAAAGCTTAAAATAGAGCTGTCCCAGAAAAATCTGCTCATAGATAACCTCAAAGTGGATCACCTCACTAAGACAGAAGAGCTAGAAGAAAGGCTGAATGATGCTCTCCATCAGAAACAGGTGCTCGCTCTGCGTTTGGACAGCCAACTCAAACTACAGCAGGATGAAAACagGAAGCACCAGGCCCTGAGAAAACAGGAGATGGACACCATCATGCTCAGACAGAAGCAGCTGGAAGAGATGAACCATCAGTTGTGTGATCGGGCCGGTGATCTCCGCAGAAGCCTGAGGGATCTGGAACTGTCTGAGCAGAAATACGCTGAGCTGAAGGAACTGCCTGAGGACAAACTCACCATCCCAGAATTTGTGGCGATTAGGTTTTATGAGGTTGTAAATCCTCTGAGGGCTCTTGCGACGGAACTTCAGATGAAAAAGACTGACCTGATTGAGGATCTGGACAGTCACCGCAAACAAATTAGGTCACTAATGGAGAGTTATGAAGAAGAAAGGAGAGCACGCTCTGAGTTAGAGATCCGCTGTCAAAGGCTCACCTTGGAACTTGCTGATACAAAGCAGCTGATTCAGGAAGGAGACTACAAACGAGAAAACTATGACAAAATCAAACGAGAGAGAGATGGCTATGAAACCGAGCTCAGAGAGTTAAAAAAGAAGTTAGAAATCCTGGACCTTACACACACTGCCTTGGAAAAAGAGAGAAATGACCTTAACAAAGAGGCAGTGAACCTACAGCAGTCAGTAACATTGCTGCAGAAAGACAAAGACTTTTTAAACAGACAGAACATGGAGTTGAATGTGCGCTGTGCTCATCAAGAAGACCGTCTGGACAGACTGCAGAACCAGCTTGAGGACACAAAGAAGGCTAGAGAAGAGGCCTATGAAAAATATGTTGCTTCTAGAGATCACTATAAGACAGAGTATGAAAACAAACTGCGTGATGAACTGGAACGCATTCGAATGAAGACCAGTCATGAGATTGAGAGCTTGCAGAGGACTTCAAAAGAGATGTATGAGAGGGAAAACAGAAGTCTTCGTGAGACCAGAGATAATTCTGTTATTGAGAGAGACCGAGCGCTAAACGCGGAAAGAGAAACTCAAGCCAAATATGATCAGCTCTTAGATCAGTTCAGGCAGCTGCAGCTGGGTTCAGACAGCAGGGTGGCAGAACTGCTCAACCAGGTGAAGCTGAAAAAGTTTGAGTTGGAGCGATCCCAGATGGTCCAGGAGGAGACAGCCAGGAACCTCAGCCTTTGTCAAATTGAGTGTGAGAAACATCAGAAAAAACTGGAGGTTCTAACAAAAGAGTTTTATGGGCTTCAAACATCATCCGAGAAACGCATCACTGAACTGCAAGCCCAGAATTCTGAGCATCAGGCACGACTAGAGACGTATGAGAGGCTGGAAAAAGAGCTGGACGATGTTACCATGCAGGCTGCAGAGAtGGAGAATGAAGATGAGGCAGAAAGGGTGCTGTTTTCATATGGTTATGGTGCAAACATTCCAACAACTGCCAAGAGAAGACTGAAGCAAAGtgttcaCTTGGCACGCAGGGTTCTGCAGCTGGAGAAACAGAACACACTGCTTAGGAGAGACCTGGAGAGACAGACGGCACACAGCAGTCAGATCTCTGAAGAGttgAATGCAGCCAATCAGCTTCTCCAACAGGCCCAGCAGCCACACAGCTACTTGATTGAAACCGTACGCCAGAGAGACTCTCAAATCCACACACTGAAAGACCGTCTCACACACTTAGAAGAGGAAATGAGTGCTCTGCGGAAAGAGAAGATTGCACTATTGCAGGTGAAAAACAACATGGCTGCAGATTTGGAGAGACTTCTTAACCACAGAGAGGAGCTTTCTGTGATGAAGCAGGTCCTGATTAGCATGCGTGGTCCTCCATCTGCTACTCTTCCTGAACTCGAGGCTGATGGGACCGCAGTTCACAGACCCAAAACATTCAAAAGCACAGATGAAGAGCAATACAATTATGGCCCCAAACCCACGGTTTTTACTAAAAAAGAAGTTCCAGAATGGTATAGAAAAGTCAAACGGAAAACCAAGTAGAGACTTGTTGAACTTGTTTAGGATGCTCCATGTCATGCAATCACAAATGAAAGTCTGTTGAAGATCCATTACATAACGAGTTACACAGGTTTGATGTGTGGCCATGAAGAATGTGAAAAACTATGAATTTCCTTTTAATGGTAATAAATCATTTTATCTAGTTCAGATAAGCGTGTGAACATgctgttattttttaattattttttttttttaattattattaaacttttcTGGCCAAATTAATATGCAGTTTCTGAATGTACAGTCTAAATATCTGAACGCATCATTTGATGGTAATGAGATCTGTATCCTTCCGTTTTGATTTGTAAGACGTGAGACACGCTGTTGGTAAAAATAGAGGAGCTTGTGCATACCTTAATCATCGCAGCCGCATTGCACGCTTATTTGTGTCATCTTAATGTTACACACTACTGGCTCAAATGTCCAGCAAGAACGCTAGCATTGAGCTGCATAGTATTGATCCAATTGATTGATCTCGTTTGCTTGAAGTGGATATTtgacttttaaaatgtctttttatttttaacatttgaatTGGCAAGCATTTATCATCTAAATGAAAATCTAGTTTGTAAATAAGTTTTGTTTCTCAGCATTGTAAACCAGCAGACGTGAGAGCGTTGAGAGCAGATGTGGTGCCATACACTCATAACATTCTCAGGAGCGGGTGTTACAGGGATGAGAATCATATTGGGAAAGTTGTTTAAGAATTAGTTGCTAAGTAAAatcacttcatttaaaaaaaaattaagttaaaaaatacAATCCATGCAAAATATGTTGAAACTTTTAAGAGGGGATATACATGTGGTAAATTGTGGGAGCATAGTTAGTTTCttagtaaattttatttatttatttatttttttacaatatgtacaGTTCATACATTTCTGCCTctgaaaagataaaaaaaaaaactttcagctTGCTTCAAGGAAAATATgtcacattatttttttcagataaaccTCATCTAAATtgcattcatttgtatttattccaAAACAATTCCAAAAcctttaagtaattaattaaattaattaatttaataaatcagttatttaatgGTCCTACAATAACACGCATATAAACTTatttacagttgcaatcagaattattaaaccctctttatttttttttcctttttaaatgtttcgcaaatgatgtttaacagaacaattttcacagtatgtctgttgatatttttttcttgtggagaaagtcttatttgctttatttcggctagaataaaagcagtttttaatttttagacaaaaaaaaaaacattttaaggtcaaaattattagcccctttaagctatttttctttttttccgatagtctacaaaacaaaacgtcgttatacaataacttccctaattaacctaacctacctagttaacctactgaaactagttaagcctttaaatgaaattaaatttaaatgattggctaataaatcaggggggttaataattctgattgcaactctAATTAATTGTAACTGATTGTAACTCTAACTAATATTTGTGTCATGTAGTGATTCATAAATCCAGTTAGTGATTCAGTTTTTGAGTTGCAATTCTGGCTCAGAATCAGACCCTGACTACACTTTGCATTTGAAAGGCCCATATTTACAAAttatgtagtatatatatatatatatatatatatatatatatatatatatatatattttatttttttttaccaagtaaGTACAtggctgaaaatgaaaagtaaaaaagagACCTTCCTTTAACCTCCACGAAACCTAGGactattttgtttccaaaaaaaaaaaaatgtgatactGTATgaacgtcatataaaaacatatttgaaCATGGAAAAAAGGGACGGATCCaagtctggatgcagacttgatgCAGTTGCAAGGTGAGCTGCATAAAAAGCTTTTTAATACCCCACCCCtgaccctacccctcacagtgacatcactagctccattaagtgcattgtgtctgacattgcaagtcAGAGAtttgcagtctcagcttgcaaatccaaGCCTGCATTCAGAGACATTTGGAAAGAGCTAAAAAATTGGGTTTTGTTGGATCATTGTACTTTCAGCCAACAAACAATAAGTCAAATGAAAGAGTGAAATCCAGCTCCAATATATGTTAATAGACTTATATTGGAGCTTGTTTTCATGATTCAAACGATTAAAGGCTGAATGTCATAGAACGAAGCAGAATGTTTGATTAGTGACCTACGTCTTTTAGGGTGGTGTTGGTTGgctttaattgaaataaaatggtCTGAATGAAATCCACATTGCTGAGAAAATATACCGAGACATTAAGTTGCACACAAACACTAGTAACTTTGCTGGATGCAGTTCACTTATTGGCCTCTGGTGTCTCTAATAACACGGGTTTCTGAATGCTACAGCATGTGTAAATTCTGCTAAATATTGATTAGAGGATGTGGTTTTATTTGATGCTTTAATGATatttttaagcctttaaactgaCTTCTTCATAAAAGGAATGCCATTTCAGAGCTGACGTAAAAAAAAGTACCAATTTGAATACATATTTCCTATTCTGTGTTTTTAATTACAAGTATTGGTGATAGATTGTTCACATTGAGAATATTcaaaaaatgttaatgcctggaataaatactgtaaaccaAAGGGAAAACCCAAAGTGTGGAACATTAGACACTTCATGCTCTCCGTTGTCACAGATTTAATTGTGTAGTGGAGTAGGCAGGGATTTCAGACACTCCTGATGAAAGACAAAAAATTCCAACAAAATTCATGGAGACAGCTGAATAGCCAATCTAGAACATAAGTGCATAGTATAATGTTATTTGGGACacttcaagacaaaaaaaattaccAGGATACATTTTTCACCATAAGAAAATCTTTGTGAGCTAACAAACTGCACTCTAAAAAACATTGGACATATTGGACCATATATAAACAAACGCTATACTGGGTTAaacgttatttatttatgtttttaactaGCATtgggtgtgtttatttttgtCATAACTTTCAACAGCCTATAGATTTTTTTAGAATGTGCTATTAATTTCGATTTCATAATGACTTAAAAAAGATCCGATCGACTGACAAGAGTCATATTGTTCAGGAATCGGGCGTTTGTGAATAAGAACTGGTTTTACTACTTACTATTGAGTCTTCACAATTAGCTTGTGTTAGTTGTTGATTAACATTGCCAGTTAATGAAACTTACTAACCGATCTAATAAATACAATGTTTACAAAATGAGCAACACCAAACGAGCTTTGAGTTGGTCAATAAAAATGATGCGCACTCGTTTTTATGCAGTTCAGTCTGTTTTTGTTAAGCAGCCTTGTCTGCACTGCCGTCATTTTCCAGATGGTAAGGGAGGTAACTTACTGGGCTGGACGTATTTAACTCGGGCTCTCTGTTTTGACGGGCTTGTTTCTCTGTTACAGTAACAGCAGTAGTAAAGGTGTAGCCGCCTCACTTTCTCAGTCGCCGACTCCGCCCTTTCGCTGAATCTTTATAAATCCTGGAGCTCCAGGAACGAAGCGAGGCAAAACGGGACATTATACCGAAAGCGCGCGCACATCCACGCACGGGTGTCATTCCATGCACCATACACTCACCACTCCTTTCTCAACGTCTATCAAAACACATCTTGCGGACGCCCTTTTGGTCACATCCACGGGTTTATGGCCGCTACGCTTCTTACCATGAGCGCTGCGCTCGCACCGGGACAAGATGACTTTCTCTCGCTTCTTAAACCCTCACTGTCCGACGGCTTTCAGGAGGACTCCTCTCTGTTTTGCTTTGAACACAAGAATCCTGACTCGGAAAGGGGCTTATCCAACGACTATTCTCAG

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005575 cellular_component cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-040801-94 Predicted to be involved in cilium assembly. Predicted to be active in centriolar satellite. Human ortholog(s) of this gene implicated in Joubert syndrome 33. Orthologous to human PIBF1 (progesterone immunomodulatory binding factor 1).

Ensembl:

ensembl_id ENSDART00000157471

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00002184 lncRNA downstream 230883 34376409 ~ 34381438 (-) False XLOC_001331
TCONS_00002960 lncRNA downstream 902982 33705097 ~ 33709339 (-) False XLOC_001329
TCONS_00002961 lncRNA downstream 902996 33707774 ~ 33709325 (-) True XLOC_001329
TCONS_00003435 lncRNA downstream 945413 33624256 ~ 33666908 (-) True XLOC_001327
TCONS_00002175 lncRNA downstream 1232327 33375492 ~ 33379994 (-) True XLOC_001325
TCONS_00002198 lncRNA upstream 26074 34711081 ~ 34713710 (-) False XLOC_001334
TCONS_00003436 lncRNA upstream 42898 34727905 ~ 34728207 (-) True XLOC_001338
TCONS_00003437 lncRNA upstream 299548 34984555 ~ 34985057 (-) False XLOC_001342
TCONS_00003438 lncRNA upstream 299548 34984555 ~ 34997788 (-) True XLOC_001342
TCONS_00003439 lncRNA upstream 300571 34985578 ~ 34988958 (-) True XLOC_001343
TCONS_00002182 mRNA downstream 161537 34365845 ~ 34450784 (-) False XLOC_001331
TCONS_00002185 mRNA downstream 161699 34428322 ~ 34450622 (-) False XLOC_001331
TCONS_00002183 mRNA downstream 164806 34366849 ~ 34447515 (-) False XLOC_001331
TCONS_00002181 mRNA downstream 276569 34321574 ~ 34335752 (-) True XLOC_001330
TCONS_00002178 mRNA downstream 965152 33645044 ~ 33647169 (-) False XLOC_001328
TCONS_00002193 mRNA upstream 22925 34707932 ~ 34713800 (-) False XLOC_001334
TCONS_00002195 mRNA upstream 23220 34708227 ~ 34713710 (-) False XLOC_001334
TCONS_00002200 mRNA upstream 26335 34711342 ~ 34713868 (-) True XLOC_001334
TCONS_00002205 mRNA upstream 63688 34748695 ~ 34750169 (-) True XLOC_001340
TCONS_00002206 mRNA upstream 269690 34954697 ~ 35113974 (-) False XLOC_001341
TCONS_00002186 other downstream 161747 34446608 ~ 34450574 (-) True XLOC_001331
TCONS_00002172 other downstream 1232353 33365183 ~ 33379968 (-) False XLOC_001325
TCONS_00002166 other downstream 1610648 33001559 ~ 33001673 (-) True XLOC_001323
TCONS_00002165 other downstream 2293410 32316335 ~ 32318911 (-) True XLOC_001321
TCONS_00002139 other downstream 3850067 30736570 ~ 30762254 (-) True XLOC_001306
TCONS_00002194 other upstream 23081 34708088 ~ 34713707 (-) False XLOC_001334
TCONS_00002196 other upstream 23306 34708313 ~ 34713706 (-) False XLOC_001334
TCONS_00002197 other upstream 23490 34708497 ~ 34708627 (-) True XLOC_001335
TCONS_00002199 other upstream 26131 34711138 ~ 34711271 (-) False XLOC_001334
TCONS_00002201 other upstream 26925 34711932 ~ 34712003 (-) True XLOC_001336

Expression Profile

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