RNA id: TCONS_00002127


Basic Information

Item Value
RNA id TCONS_00002127
length 1722
RNA type mRNA
GC content 0.49
exon number 13
gene id XLOC_001302
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 30443193 ~ 30510957 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AATATATAACTGAACAAGTTCCCTACAAGCTTTCCAGTTACACGCATCCTTGGGAATTGGTTTTATTTGTCAGGATGGGATGCGTTTTGGATATTTCCGCCGGGTGGTGCATTTCACGGATTTCCCGCAGAATTAATTTTCTGTAATATCTTGCTGAATTTATTTGAAAGGCTCCACAGGACGAAACGGGACTTGCACAGGAAGGTGTTCAAGGTTTCCTAGAAACTTGAGGGCTGTTGACAAGTTGACAGGCCACAGTTTTTGAGAATCACTCCTTCAGTGTGTCGTACATACTGGACAAGGAGGCAGGAAGGGACGGGGCTGGAAGACCCCAGGTCCCGCGAGGGGCATCTAAAATGGTGACAGGAAGTCGGGAGCAAGAGTTTGGTCAACCAGGGGCCATGGGAGGCCCCCAGGGGCCCAGGCAGCGTCAGCAAGAGCTGCCTCTAAGAATCCTAGTACCTACTCAGTTTGTGGGAGCCATCATTGGAAAAGAGGGGCTCACTATAAAGAACATTACCAAGCAAACACAGTCCAAGGTAGATATCCATCGTAAAGAGAATGCTGGGGCGACTGAGAAGGCCATCACTATTCACTCCTCTAAAGAGGGCTGTTCACAAGCCTGCAGGATGATTTTGGAAATCATGGAAAAAGAGGCCAATGACACTAAGATTGTTGAGGAAGTTCCTTTGAAGATCTTGGCCCACAACAGTCTTGTTGGCAGACTCATAGGGAAGGAGGGCAGGAACCTGAAAAAGATAGAGCAAGATACTGGGACCAAGATCACCATCTCTGCATTACAAGACCTGACCGTTTATAACCAGGAACGTACCATCTCGGTGAGAGGAGGGGTAGAGGAGTGCTGTAAAGCAGAAGGGGAGATCATGAAGAAACTTAGAGAAGCCCATGAGAATGATGTAGCTTCAGTTAATCAGCAGACTAACATGATGGCTGGCCTAAATCTGAGTGCGCTGGGGATCTTCTCCTCTGGCATGTCTGTTCTCCCTCCTGCCTCAGGGCTGCGTGGATCTCTGTCCACCCCTGCCAACTACAGCCCTCTGCTGGGACCCTCAATAATGGGAGGTCTATATGGGGTTCCTTCTTCTGGAGCTTTATCTCTTCAGCAAGCAggtggTGAACAGGAAGTGGTTTATCTCTTTATCCCCACTCCGGCAGTTGGAGCTCTCATTGGAAAGAAAGGGCAGCACATTAAAGAGCTGGCACACTTCGCTGGAGCCTCAATAAAAATTGCTGCACCAGAGAGCCCTGATGAACCCGAGAGGATGGTCATTATCACTGGACCACCAGAAGCTCAGTTCAAGGCACAGGGAAGGATATATGGGAAGCTGAAAGAAGAGAATTTTTTCACAGCTAAAGAAGAGGTGAAGTTGGAGGCGCATATAAAGGTGCCATCAACTGCTGCAGGACGAGTCATTGGAAAGGGGGGCAAAACGGTCAATGAGCTGCAGAATCTCACCAGCGCCGAGGTCATTGTACCACGGGACCAGACACCAGATGAGAACGATgatgtatttgtcaaaataattGGACATTTCTTTGCCAGTCAGACGGCCCAACGCAAGATCAGGGAGATCGTTCAACAGGTCAAACAGCAAGAGCGGAAGCACCAGCAAATGCCGCAAACACCTTCTGAACAATCAAATTGATCAGCAGACGCCAGCAAGCAGCAGCTAATGAATGTAGCTCATGCAAGGACAaatc

Function

GO:

id name namespace
GO:0051252 regulation of RNA metabolic process biological_process
GO:0010468 regulation of gene expression biological_process
GO:0007399 nervous system development biological_process
GO:0005829 cytosol cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003729 mRNA binding molecular_function
GO:0003730 mRNA 3'-UTR binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-536 Predicted to enable mRNA 3'-UTR binding activity. Predicted to be involved in nervous system development; regulation of RNA metabolic process; and regulation of gene expression. Predicted to be active in cytosol and nucleus. Human ortholog(s) of this gene implicated in type 2 diabetes mellitus. Orthologous to human IGF2BP2 (insulin like growth factor 2 mRNA binding protein 2).

Ensembl:

ensembl_id ENSDART00000168189

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00002124 lncRNA downstream 2179 30439422 ~ 30441060 (-) True XLOC_001301
TCONS_00002122 lncRNA downstream 108410 30333202 ~ 30334829 (-) True XLOC_001299
TCONS_00002112 lncRNA downstream 784462 29653949 ~ 29658777 (-) True XLOC_001294
TCONS_00002110 lncRNA downstream 1116291 29323374 ~ 29326948 (-) True XLOC_001292
TCONS_00003428 lncRNA downstream 1264931 29176676 ~ 29178308 (-) True XLOC_001291
TCONS_00002958 lncRNA upstream 317517 30828356 ~ 30842747 (-) False XLOC_001307
TCONS_00003429 lncRNA upstream 318739 30829578 ~ 30841415 (-) False XLOC_001307
TCONS_00002140 lncRNA upstream 319158 30829997 ~ 30831196 (-) False XLOC_001307
TCONS_00002959 lncRNA upstream 327724 30838563 ~ 30878846 (-) True XLOC_001308
TCONS_00002141 lncRNA upstream 329377 30840216 ~ 30841415 (-) True XLOC_001307
TCONS_00002123 mRNA downstream 76415 30343714 ~ 30366824 (-) True XLOC_001300
TCONS_00002120 mRNA downstream 403907 29990772 ~ 30039332 (-) True XLOC_001297
TCONS_00002119 mRNA downstream 403908 29954690 ~ 30039331 (-) False XLOC_001297
TCONS_00002118 mRNA downstream 682153 29755022 ~ 29761086 (-) True XLOC_001296
TCONS_00002117 mRNA downstream 684292 29754788 ~ 29758947 (-) False XLOC_001296
TCONS_00002131 mRNA upstream 29132 30539971 ~ 30568225 (-) False XLOC_001303
TCONS_00002132 mRNA upstream 29143 30539982 ~ 30568225 (-) True XLOC_001303
TCONS_00002133 mRNA upstream 74301 30585140 ~ 30689004 (-) False XLOC_001304
TCONS_00002136 mRNA upstream 207407 30718246 ~ 30723241 (-) False XLOC_001305
TCONS_00002137 mRNA upstream 208978 30719817 ~ 30723258 (-) True XLOC_001305
TCONS_00002121 other downstream 198594 30244531 ~ 30244645 (-) True XLOC_001298
TCONS_00002109 other downstream 1258012 29175462 ~ 29185227 (-) True XLOC_001290
TCONS_00002108 other downstream 1267539 29174903 ~ 29175700 (-) False XLOC_001290
TCONS_00002105 other downstream 1304664 29111261 ~ 29138575 (-) True XLOC_001288
TCONS_00002101 other downstream 1381912 29058272 ~ 29061327 (-) False XLOC_001287
TCONS_00002134 other upstream 78404 30589243 ~ 30612490 (-) False XLOC_001304
TCONS_00002135 other upstream 107641 30618480 ~ 30641536 (-) True XLOC_001304
TCONS_00002139 other upstream 225731 30736570 ~ 30762254 (-) True XLOC_001306
TCONS_00002165 other upstream 1805496 32316335 ~ 32318911 (-) True XLOC_001321
TCONS_00002166 other upstream 2490720 33001559 ~ 33001673 (-) True XLOC_001323

Expression Profile

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