CI01000325_09571021_09576839 (SCYL3)


Basic Information

Item Value
gene id CI01000325_09571021_09576839
gene name SCYL3
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000325
NCBI id null
chromosome length 10587162
location 9570486 ~ 9577181 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000325_09571021_09576839.mRNA
ATGTTGTTTGAAAAACCTGTATGTCATTGCAGCAACCATATGCCAATAATTACTGTGACCACTTAGTCTAAATGTTATTTTCAGATTGTCATTGATTGAAAGACAGGTAAGAGCACTGAATAAAGATTGTAATGAACATTCTGCTACTTTTTGACATGTTGCATGCTCCTTATTGCATGTCAGTGAGTACTGTACCCTGTTTCAATAATCAATGGTGTTTCAATTATGACAGTGTCATCAGTATACATATGAAGGATACATTTTGTCTTTTGTAGCACAGGTATTCAATATGTCTTTTCCACTGACAATGTGATAGGCAGACGATACCATCTCAGAATAAGGATGGGTGCTGAGAGCAGTGCCCTGCCAAGCTGTGTGCTGGAAGAGCCGCTGCTGACGCTGCCCTCTGGTCTTACCATGTACTCCGCCCTCCTCCGGGATGGCAAGCCTGCCTCCGTCTTTGTGCATAAGCAAGACAATGAAGATAAAGTCAATAAAGCTGCCAAGCACTTGAAGACATTAAGGCATCCGTGTCTTCTTCGCTTCCTGTCATGCTCAGTGCAGGATGGCGGTATACATTTAGTGACAGAGCCAGTTCAACCATTAAAACGGCTGCTAGACAATCTTACTCCAGAGGAAATCTGCGCAGGCCTCTATGATCTGCTGCAAGCACTAGTCTTTCTACATGACAGGGGCAAATCAAGTCACAATAATGTATGCATATCCTCAGTGTTTATCAGTGAAGATGGCCATTGGAAGCTTGGGGGAATGGAAACTGTCTGCAAGTTTTCAGAGGCAACACCAGAGCTTGAAGGATTCAAAACTCTTCCCGACAAGCATGCCCACTCCCGAGACGCTTTTTCATTCGGGGTGATGTTGGAGGCTCTTCTTCCACTCCTGACGGGACATGTCTCAGATGATTTATTGGAGAGTCTAAAGAACATGCTGCAGGCCAGCCTATTGACCCCTGACCCCATGTCTCGCCCATCTCTCAGCAGTTTGCTGACTCACGCTTTCTTCAGAAATGACTTCTTAGATATCATGAATTTTCTGAAGAGTTTGACCCTGAAAAATGAGGAGGAGAAGAATGAATTCTTCAAGTTTCTCTTGGACCGAGTTCAGAACCTCCCAGAGGTGTTAATTGCTACACGTCTGGCTCCTAAACTGCTCAATTCTTTAGTGTTTGCTGAGCCCATGGCTGTGAAAAGCTTCCTTCCTAACCTGCTACGGCCTAAGCAAGACCCAAATGTAAGTGCTGGAGAGGAGTGTCTTCTGTCTATGTCTTTGTATCGGAGATACGTGGTTCCTCAGCTCCTCAAGCTCTATAAGATGAATGAGGAACATGTCAGGATTGTGCTTCTCTCCCACATTCACATCTATGCAGAGTTCTTTCCTCATGAAGAACTCAAAAAACAGATTCTTCCTCAGGTTTTGCTGGGAATGAGGGATACAAATGACTCACTCGTCGCTCTGACACTACAGAGCTTGGCTGTGCTTGTCCCGTTGCTGGGTGCCCAAGTGGTTGTTGGTGGGGAGAGGACAAAAGTTTTTAAACGGACAACGCCAAACTTCACCAAGTCAACAGAGGTCACCCCAGAGACATCACCTGTGCATATTGTTGGGCCATCACATCCCCATATCTCACAACCACCCAAAGTTCTGAATCTGTTCCCTAAGGGCTCAGAGGACAAAAAGGTTGTTATAGAAAATATGTACTCCTTCCAAGCAACTGAAAAAAACACCGCTCAGCGCACCATTGCAGAGAGAGCAGGGTTTAGCAGCGAGATGTCGTTCCCTTTGAATGGGTACAAAATAGGCACACAGGCTGTGGACAGCATGAAAAGTAACGGAGCGGTGAGATCCGACGAAGACTGGCCTAACTGGAGTGACACAGAGGAGGCAGAGAAAGACAAGAGCCAATCAGTCCAGATTAGCATTCAGTCGGCAGATATCCCAGCTCAGAGCAACTCTGCTATGCCAGCCAACAATGAGGATGAGAGCGAGGAACCCTGGGATGATTTCGAGGACTCCGAAGTGATCTCAGAACAATCACCCTCCACTCCTTTACCAGTCTCTGTACCAAAGACATCAACAAAAAGCAGTGCGTCATCTCTGTCTGAAGCTAGAGGTGGCCCTCCAAGACAGTCAAAAGCACTCAAACTGAACCCTAGTGTGAAAAGAGCTCCAGATCATAACCATACCTCATCATGGGACACCGGTTGGGACCAGGCAACTGACACCCTCAAACCCAGCAAAACAAGTTTAGCATCGGAGCCCAAGCCAAAAAGCACAATCAAAAGCCCTAAAGCTGGAAGTCTCGGAGAGGAGTTCACAATTGCGGTGAAGAAGAAGCCAGAGAAAGATCCAGAACTAGACTTCTTTGCAGACATGGTCCCAGAAATAAAGCTGTCTTCCTCATCTCTTCTGCTCCCTGTGGAGAGCTCGGCCAGTGAACCCATCACGGGATATACAACATCAGACCCATCGATAGATAGACTAAGCCTCACTGCCAAATTTGCTGCAGCTGACTTGACTGAGACTGAGGCAGAAGGTTGGGGTGATGACCTCAACTGGGAAGATGGGAACACATGGTGATCACTGTGGTCCTCTACAGAAAGCCATATGACACAGATTCCCATACAAAAACACTTACATATGCCATCATGATATTGTCACTAAAGACCAACCAATTAGACTACAACAGACATAAAAATGTAGTAATTAAGAACTACAGTTTAAGAGGGTAGTGTGTATTTTCAGATTCCCGCACTCAATCCAATATGATAATCAATCTACCGTCGCAATAGAAATTGTTTGGCTAATGAAAAGGGTGTCGTTTTGTTTTTTCAAGATAGCATGATGGACCTAAGTATGCCAAATCCTATTAGGAATCCTTCAGTTATGTTGCACTGAGGAAGGCTACATAACTTGAAAATACATCCACTTCTAATGTTGGTTTTATTTGTGCCATACAGCTTTTTTTTTGTTGTTGTTGTTCAATAAGCCTTAGAGGACAGACAGCCTCAACGTGAGGAAAAAATGCATTCATACACGGACTCTAATTTGTTCACTAGATTTGGGTGAGAGCCTGACATAATTTATTTGTATTATCAGCTGCTGATTAAATAAA

Function

symbol description
scyl3 Predicted to enable ATP binding activity and protein kinase activity. Predicted to act upstream of or within protein phosphorylation. Orthologous to human SCYL3 (SCY1 like pseudokinase 3).

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process

KEGG:

id description
K17542 SCYL3; SCY1-like protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000325_09571021_09576839.mRNA True 3130 mRNA 0.45 12 9570486 9577181

Neighbor

gene id symbol gene type direction distance location
CI01000325_09537381_09540937 NA coding downstream 29156 9537216 ~ 9541330 (-)
CI01000325_09518831_09533382 NA coding downstream 36699 9518763 ~ 9533787 (-)
CI01000325_09434932_09471529 NA coding downstream 98957 9434905 ~ 9471529 (-)
CI01000325_09400787_09422170 FAM102B, FAM102BB coding downstream 148316 9400787 ~ 9422170 (-)
CI01000325_09334619_09368476 ROCK2B coding downstream 202010 9334604 ~ 9368476 (-)
CI01000325_09587938_09597881 TPRB coding upstream 10757 9587938 ~ 9597881 (-)
CI01000325_09614126_09615953 PDCB, PDC coding upstream 36364 9613545 ~ 9615953 (-)
CI01000325_09641427_09644339 PTGS2B, PTGS2 coding upstream 63722 9640903 ~ 9644406 (-)
CI01000325_09681336_09769766 HMCN1 coding upstream 103917 9681098 ~ 9769766 (-)
CI01000325_09812512_09821344 NA coding upstream 235310 9812491 ~ 9821344 (-)
G468562 NA non-coding downstream 174948 9386454 ~ 9395538 (-)
G468551 NA non-coding downstream 195121 9375143 ~ 9375365 (-)
G468550 NA non-coding downstream 196137 9373991 ~ 9374349 (-)
G468460 NA non-coding downstream 237287 9331030 ~ 9333199 (-)
G468481 NA non-coding downstream 365639 9204570 ~ 9204847 (-)
G468545 NA non-coding upstream 2809 9579990 ~ 9581436 (-)
G468533 NA non-coding upstream 95669 9672850 ~ 9674067 (-)
G468526 NA non-coding upstream 219230 9796411 ~ 9799055 (-)
G468639 NA non-coding upstream 255764 9832945 ~ 9833293 (-)
G468640 NA non-coding upstream 256583 9833764 ~ 9834139 (-)
CI01000325_09286047_09286556 ERH.L, ERH, ERH.S other downstream 283162 9285532 ~ 9286556 (-)
G467741 NA other downstream 872903 8679172 ~ 8697583 (-)
CI01000325_08571807_08594165 NA other downstream 999008 8568722 ~ 8594736 (-)
G467578 NA other downstream 1615294 7946345 ~ 7955192 (-)
G467570 NA other downstream 1953656 7615486 ~ 7616830 (-)
G468702 NA other upstream 589918 10023665 ~ 10193979 (-)
G468823 NA other upstream 738949 10316130 ~ 10316685 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location