Gene
RNA
| Item | Value |
|---|---|
| gene id | G467578 |
| gene name | NA |
| gene type | unknown |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000325 |
| NCBI id | null |
| chromosome length | 10587162 |
| location | 7946345 ~ 7955192 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU536674 | True | 8515 | TUCP | 0.41 | 3 | 7946345 | 7955192 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000325_07921827_07924727 | HPCL1, HPCAL1.L, NCALD, HPCA.S, HPCAL1, HPCA | coding | downstream | 21542 | 7921822 ~ 7924803 (-) |
| CI01000325_07842685_07843506 | NA | coding | downstream | 102364 | 7842614 ~ 7843981 (-) |
| CI01000325_07804434_07838590 | FNDC1 | coding | downstream | 107755 | 7803813 ~ 7838590 (-) |
| CI01000325_07767596_07772629 | WTAP | coding | downstream | 173716 | 7767074 ~ 7772629 (-) |
| CI01000325_07762711_07766606 | ACAT2 | coding | downstream | 179695 | 7762017 ~ 7766650 (-) |
| CI01000325_07981141_08041611 | UST | coding | upstream | 25949 | 7981141 ~ 8041611 (-) |
| CI01000325_08045625_08085553 | SASH1A, SASH1 | coding | upstream | 90401 | 8045593 ~ 8085553 (-) |
| CI01000325_08274921_08276062 | SAMD5 | coding | upstream | 319183 | 8274375 ~ 8276110 (-) |
| CI01000325_08294503_08351697 | STXBP5A, STXBP5 | coding | upstream | 339167 | 8294359 ~ 8352537 (-) |
| CI01000325_08366684_08385221 | STXBP5 | coding | upstream | 411182 | 8366374 ~ 8385316 (-) |
| G467594 | NA | non-coding | downstream | 13033 | 7931169 ~ 7933312 (-) |
| G467703 | NA | non-coding | downstream | 49365 | 7893797 ~ 7896980 (-) |
| G467696 | NA | non-coding | downstream | 63796 | 7865070 ~ 7882549 (-) |
| G467677 | NA | non-coding | downstream | 164855 | 7781174 ~ 7781490 (-) |
| G467676 | NA | non-coding | downstream | 166837 | 7779245 ~ 7779508 (-) |
| G467730 | NA | non-coding | upstream | 431274 | 8386466 ~ 8387233 (-) |
| G467736 | NA | non-coding | upstream | 443332 | 8398524 ~ 8398751 (-) |
| G467784 | NA | non-coding | upstream | 568800 | 8523992 ~ 8524875 (-) |
| G467792 | NA | non-coding | upstream | 578082 | 8533274 ~ 8534040 (-) |
| G467793 | NA | non-coding | upstream | 578917 | 8534109 ~ 8534326 (-) |
| G467570 | NA | other | downstream | 329515 | 7615486 ~ 7616830 (-) |
| G465716 | NA | other | downstream | 2318177 | 5626213 ~ 5628168 (-) |
| CI01000325_05531464_05543064 | ITPK1A | other | downstream | 2413503 | 5528844 ~ 5543064 (-) |
| CI01000325_05430077_05434997 | NA | other | downstream | 2511292 | 5430010 ~ 5435253 (-) |
| CI01000325_04815250_04816016 | CHURC1 | other | downstream | 3130267 | 4815234 ~ 4816188 (-) |
| CI01000325_08571807_08594165 | NA | other | upstream | 609438 | 8568722 ~ 8594736 (-) |
| G467741 | NA | other | upstream | 723980 | 8679172 ~ 8697583 (-) |
| CI01000325_09286047_09286556 | ERH.L, ERH, ERH.S | other | upstream | 1330340 | 9285532 ~ 9286556 (-) |
| G468702 | NA | other | upstream | 2211907 | 10023665 ~ 10193979 (-) |
| G468823 | NA | other | upstream | 2360938 | 10316130 ~ 10316685 (-) |
