CI01000325_10048467_10054065 (PNOCB)


Basic Information

Item Value
gene id CI01000325_10048467_10054065
gene name PNOCB
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000325
NCBI id null
chromosome length 10587162
location 10048467 ~ 10054361 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000325_10048467_10054065.mRNA
CTGACCGACAAAAATGGAAACGGGAAAAACAGAAGAAAAGCAGCAGACTTGAATCTAGTGGTGACTCAATTCAAGCATTTGTGTTTCAGCCAAGGTGCGGGGACAGAATGAGAATGGGTTTTGGTGTTTACCGTGGAGAGCTCCCAGTGTCTACGCTTACTCTAAGTTCCTGCTTCACTTGTGTGTTCTGTGAAGAAGTCATGAAGACCCCATTTTGGACCCTGCTGCTCTTATGCTTGTGCTCCTCGGGTCACAGCGACTGCCAAGGGGACTGTTTAACCTGTGGACTCATCCTACCTGAACATCAAGCTTTTAATACATTGGTGTGTATCCTGGAGTGTGAGGCACAGGCATCTCCTGCATTGACCTGGGATTTGTGTTCCCAAGCAGCGGGTCTGAACCAGCTTCCACTACCGTTACAGGAGGAGGAAACTTCAAAGCGCTCTGATGATGAAGCGGAGCCTCTGGCCACAGTGAGCATAGAGAATGACAATGGTGTCGAGTACACTGAGGCTTTGGAGCGGTTTCGACATGCCGCGCAAGCACTCCGCAGCCAAAAGCCTTCAGAGGAGGAGGAGGAGAAACTCGGAATTTCATATGACCCGGACCTTGACCCGGGGACAGAGGAGGACCAGGATGGTGTAGGAAAAGAGAAGAGCGGTGAGGCAGCCGTGAGCGTTTCCAAGCGATTTGGAGGTTTTATGAAAGGTCGTCACGGTTTCCGGAAATTGGTGAGCTCCGGAAGGCCTTTGCAGAAACGCTACGGTGGCTTCATAGGGATAAGGAAATCTGCCCGCAAGTGGAACAACCAGAAGCGCGTGAGTCAGCTACTGAGGCAGTACCTGAGCTTGACGGGCCGCTCGGGGCGTTCAGGGCGTTCAGGTCACATCAGTAACCTCTCCGCCAGAATCCGAAGACAGAATGAAGTTTAGATGGCTTTAGCGCAGGCCCTGGTCTTTTCACTTACCTCAACTCAACTGCTCATCAGCCATCAGTAACTGTGAACATCTGTCATGCACCACAGCCCAGAACTAGATTAATCTGTGTTTAATCAAAGAAGAGGAATATTTTGTATAGCGTTGGTTTTTATCATTGACATTTCCATGGTGCCGTTCCCGACATCAGAAACATCTCAATCAAGTCGTTAGGACAAATGTTGCTGATGAGAACTGATTGTTTATTTGAGAATCAAAACTCCTAGAATTAACCTTGAAGCATTGTGAAAAAA

Function

symbol description
pnocb Predicted to enable opioid receptor binding activity. Acts upstream of or within ectodermal placode development. Predicted to be located in extracellular region. Predicted to be active in several cellular components, including axon terminus; dendrite; and neuronal cell body. Is expressed in brain; neurogenic field; and preplacodal ectoderm. Orthologous to human PNOC (prepronociceptin).

GO:

id name namespace
GO:0007218 neuropeptide signaling pathway biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000325_10048467_10054065.mRNA True 1228 mRNA 0.49 3 10048467 10054361

Neighbor

gene id symbol gene type direction distance location
CI01000325_10012327_10030563 ELP3.L, ELP3 coding upstream 17844 10012327 ~ 10030623 (+)
CI01000325_09953481_09993079 NBPF6 coding upstream 55368 9951157 ~ 9993099 (+)
CI01000325_09903208_09908725 PRRX1A, PRRX1, NOTO, PRRX1B coding upstream 139241 9903130 ~ 9909226 (+)
CI01000325_09896055_09897934 GORAB coding upstream 149787 9895831 ~ 9898680 (+)
CI01000325_09866722_09873388 METTL11B coding upstream 174574 9866722 ~ 9873893 (+)
CI01000325_10077265_10086696 MCM3 coding downstream 22904 10077265 ~ 10087272 (+)
CI01000325_10090866_10091109 NA coding downstream 36505 10090866 ~ 10091226 (+)
CI01000325_10127601_10139309 EMILIN1A coding downstream 72890 10127251 ~ 10140885 (+)
CI01000325_10143735_10150373 ANKEF1, ANKEF1A coding downstream 89374 10143735 ~ 10150573 (+)
CI01000325_10183659_10190907 SNAP25, SNAP25.S, SNAP25A, SN25A coding downstream 129298 10183659 ~ 10191608 (+)
G468256 NA non-coding upstream 37120 10009872 ~ 10011347 (+)
G468276 NA non-coding upstream 127902 9920354 ~ 9920565 (+)
G468275 NA non-coding upstream 129402 9918814 ~ 9919065 (+)
G468239 NA non-coding upstream 264635 9783610 ~ 9783832 (+)
G468238 NA non-coding upstream 266619 9781648 ~ 9781848 (+)
G468348 NA non-coding downstream 141004 10195365 ~ 10197030 (+)
G468349 NA non-coding downstream 152711 10207072 ~ 10208692 (+)
G468354 NA non-coding downstream 167630 10221991 ~ 10222221 (+)
G468377 NA non-coding downstream 179024 10233385 ~ 10236165 (+)
CI01000325_08732866_08734588 NA other upstream 1313915 8732514 ~ 8734758 (+)
G466752 NA other upstream 1473257 8574116 ~ 8575210 (+)
G466219 NA other upstream 2562060 7482036 ~ 7486407 (+)
G466227 NA other upstream 2733655 7312083 ~ 7314812 (+)
G466236 NA other upstream 3043812 7003617 ~ 7004655 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_017474 pnocb coding NC_007131.7 CM002904.2 34717403 ~ 34734022 (+)