CI01000325_10143735_10150373 (ANKEF1, ANKEF1A)


Basic Information

Item Value
gene id CI01000325_10143735_10150373
gene name ANKEF1, ANKEF1A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000325
NCBI id null
chromosome length 10587162
location 10143735 ~ 10150573 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000325_10143735_10150373.mRNA
ATGCAAATGCTACCATACATTTTTAATATTCTCAGGTTCATAATGTCATGCACCCTGGCCAAGGGAAGGCTTGAAGTTTTGCAGATCTACCGGCTGCTTCAGTGCGTCCAGGACGGAGATAAGCCTTACATAGAGAAATTAATCAGCATGGGTGTTGATGACCTCATCAATCTCACCGAGCCACGCGAGGGGAATGGTGTCCTGCACCTGGCGTCGGTGGCCAACAATCCTGACATGCTGGAGTTCCTCGTAGCTCAGGGTGCTCGTCCAGACGTGCAGGACAGCAGGGGGCGGACACCGCTGATGCTGGCCGCAGAGCTCGGATATGACGGCTTGCTCTTCTACTGCATCCACCCGACCAAAAGGCACATGCGCTGCCTCCAGGTGGCCCTTACAGGCAATGCAGATGTCAACAATGTTTCAGAAACTGGGATGCCGGTGTTCCTGCTGGCCTGCGAGCAAGCTCAGGACTGTGAGGGAATGTGTCTCAGTATCCTAGAGAGAGGAGCAGACCCCAATGCTACAAATCAAGAAACAGGTCGGACAGCTCTGATGGAGGCCACCAGAGCGGGAGCAATAGATCTTGTGAGAGCCATCCTCAGGAAAGGAGGAAACGTCAATGCTCTGGATAAGAAGCGATTCCACTCAGCTCACTTTGCGGCTGAACGAGGCTTCTTTGAAATCATTAAGGTGCTGTCTGCATATGCAGCAGATTTTGGAGTAGTAACAACAAAGGGGGATACACCGCTGCACTTTGCTGCCTCTGGTGGCTACACAGATTGCTGCAGGTTTCTAGCTCAAAGAGGATGCAATCCCAAATTGAAGAACCAAGAAGGTCTGCTTCCTCGTCAGATTGCAAAGGACTGTGGCCACAAAGCCACTGTAAAAGAGCTTAAGAAGGCTGAACGACTACATGGAAAGTTCTCAAAAGGGATGGGTGGCACAAATGAACCATGGGCTCTGACACTTCACGACTGGTCTCATGAAAACGAAAATGCGCTAAGAAGTGCTTTCGAGTCTGCATCAGATGGCATCATGGGAATAGAGGTGGTGTCCAGGGTGACATTTGTGTCTGTTCTTCAGGAACTTCACGTTCCTCTAGATGATGACCAAATTCACACTCTTCTGCTTGCTCTGGATAAGAGAAGAGAGGGCTTTATAAATATAAATGACTTTCTAAGAGGTCTAAAATATCTTCCAAAGATATATGTTATGGCATCTTATGGGCCTAAGAAGAAGAAGGCGACCAAGGCAGGAAAGACCAAAAAGACTAAGTTCAATCCACCCATGCCCATCTGCACTGTCCCGCCTGATCTCATTCATCGGCGTGATGATGGTGGGCCACCGCATTTTATGATTGAAAGCTACCAGCATGCTACAGATACTCACAGATATGACCGGGACCATCGACCAGGACATCCTATCGAGGATGATACATCGTGGTACATCGAAGAGCCCGAAAAGATATACATAAACATGAACTACTGTGCTAAAACAGGAGATATTGAGTCTCTTAGGTTAGCACTCAGCCAAAAGGTTCCAGTAGATGTGAAGGATCGCTTCTACAAGACACCACTTATGGCTGCATGTGCAAGTGGCAACTATGAAGTGGTAAAGTTCCTCCTTGATAATGGGGCTGATGTGAACGCATGCGATCAGTTCAGCTGGACTCCTCTGCACCATGCCTGTCATGCAGGACAGCTGGACATCATACAGTTGCTGGTGGAGGCAGGAGCTTCTGTGGACCCACCCACCCTCAATGGAGCCACTCCTCTAATGAGAGCCATTGAGAGCTGTAGGCCATCCTGTGTGGAGTACCTCATCAAAGCTGGGGCAAAGATCAATGCAGTAAATAAGACAGAGCAAAATTGCTTGGACGTTGCCCATGCTTATGCAGACTTCAGAGTGGTGGATTTGATCCAGGCTAAGATTAATACACTACCCAGACCTAAGGACAACAAGAAGCCACAGCCTGTCAAAGTCCACCGCAAACCTACGCCAGCCTCTACCCCTGGCTCTACAAAAGAAAAGCAGGGCACCGTTCCCACTCCCACAGCCTCCTCAAACTCAGCAGTCAAGAAAGCAATGAAGAAAGACAGTGTTATCGTGCACAGCACTCAGATCACCAGCGGCAAGCTCAACAAATTGGACATCAGTTTTGTGCCAAGAACGACATGGCAAAATCAGCTGACCACCAGCGAGCTGATTGAGAAAAAGGCAAGGAGGAGGCAGCGTTTCAGTTTTGAGGTGGACTTTGATGACTTCAAGATGCCATTCAATAAAAACATTCAGAAGAAGACCGTGGAGTTTGAACTTACAGACTGAAAGGTGAAAACCTGTCTAAGATCAAAACAACACTGATGCACAAATATTGCTTGCTGATGCTAAGGCAAACACTATTATTAGTGCTCATTTTTGGGTTAGGGATTTGCACAGACTCCACAGAACAGAAGTAATAATAATCTTTGGCATGTCCTCTTAATTTTTATTAAGTGAGCAGACAAACAGTTTCTACCTAGCAGACA

Function

symbol description
ankef1a Is expressed in several structures, including digestive system; extension; forerunner cell group; otic vesicle; and pleuroperitoneal region. Orthologous to human ANKEF1 (ankyrin repeat and EF-hand domain containing 1).
ankef1 Predicted to enable calcium ion binding activity.

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000325_10143735_10150373.mRNA True 2525 mRNA 0.48 9 10143735 10150573

Neighbor

gene id symbol gene type direction distance location
CI01000325_10127601_10139309 EMILIN1A coding upstream 2850 10127251 ~ 10140885 (+)
CI01000325_10090866_10091109 NA coding upstream 52509 10090866 ~ 10091226 (+)
CI01000325_10077265_10086696 MCM3 coding upstream 56463 10077265 ~ 10087272 (+)
CI01000325_10048467_10054065 PNOCB coding upstream 89374 10048467 ~ 10054361 (+)
CI01000325_10012327_10030563 ELP3.L, ELP3 coding upstream 113112 10012327 ~ 10030623 (+)
CI01000325_10183659_10190907 SNAP25, SNAP25.S, SNAP25A, SN25A coding downstream 33086 10183659 ~ 10191608 (+)
CI01000325_10250179_10252706 NA coding downstream 98794 10249367 ~ 10253153 (+)
CI01000325_10256815_10257312 NA coding downstream 106242 10256815 ~ 10257886 (+)
CI01000325_10266709_10324239 CDC42BPA coding downstream 115029 10265602 ~ 10324253 (+)
CI01000325_10348845_10351323 FBXO16 coding downstream 198272 10348845 ~ 10351428 (+)
G468256 NA non-coding upstream 132388 10009872 ~ 10011347 (+)
G468276 NA non-coding upstream 223170 9920354 ~ 9920565 (+)
G468275 NA non-coding upstream 224670 9918814 ~ 9919065 (+)
G468239 NA non-coding upstream 359903 9783610 ~ 9783832 (+)
G468348 NA non-coding downstream 44792 10195365 ~ 10197030 (+)
G468349 NA non-coding downstream 56499 10207072 ~ 10208692 (+)
G468354 NA non-coding downstream 71418 10221991 ~ 10222221 (+)
G468377 NA non-coding downstream 82812 10233385 ~ 10236165 (+)
G468400 NA non-coding downstream 252619 10403192 ~ 10403456 (+)
CI01000325_08732866_08734588 NA other upstream 1409183 8732514 ~ 8734758 (+)
G466752 NA other upstream 1568525 8574116 ~ 8575210 (+)
G466219 NA other upstream 2657328 7482036 ~ 7486407 (+)
G466227 NA other upstream 2828923 7312083 ~ 7314812 (+)
G466236 NA other upstream 3139080 7003617 ~ 7004655 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location