G468349


Basic Information

Item Value
gene id G468349
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000325
NCBI id null
chromosome length 10587162
location 10207072 ~ 10208692 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU537570
ATTATTATTAGTTTTTGCTTTAATGACAGCAGCACTAACTTGATATTTTGTACAAAGGAGTTCACATTCACAAAATGAAAGAAAAAATCTTATTTTTGTATTCATTTTACATGGTTTTTCTTTAAATTTTTTAAAAATCTAACACTTTCTGTTTATAATTACACTTTGAATCCTATATTTCCAATGAGTATTTAGTCTTTTTAGACACCTCACTGTATGTTTTTGTGATGATTCACATATTCAAAAATTAAATTAAGCAAAATGAATGAATTATCTCATTACATACTTTACATTACAATTGCATTTAAAGTTCAAGCATGCTGTTCTTTTGGCAAGAAAATAATGACAGTACAATGATCATGAAATTGTCTCTTAATCAGGGCTATGGCACTGTAATATTTTTGTTCTGTACATCTTAATGCTTTAAATTAAATTAGCTATGAGTCAGTCTACAAATGACCCATTGGTCTCCAAAGAGAAATGCTCCTACTTCACCCAAGGTTATGTGTGCCAATTCCATTTACTGTCTTCCATTCAGAAGACCAATCCTATTATCACAGACAGAATTACAGCATAAACCCACTTCCAAAATATATTTCCAGTCATAATTCAGAGATTTCATGTATACTACTTTGGAAAGGAAAATGGAAAGACATACAACAAAACAGGATTCTAGTTCTGAGCATAACATTAAAACACTTAAAATTTAAGACCCCCTATTATTGATAACAAAAACTCACACTCACTTTGACTGCTGAACACAAAACATGTTTGTAACTAAAATAAATTGACTGCTTGCTGACTTTCATACAATTATACAATTTTCAGATTTATTTTGTACCTGCTGACCACAAGAGAAGTGCTAGAACAACACCAAACTGACATTATCTAATCAGAACTGATCGATTATCATTATTCAGCCTGGTCATGTGCTATCCGTTACATGTCAATCATAAAGCCATTTCTTTGATAAGTTAACATTGCTACATACACCCATTTTTGCTTATTCATGTTGATTGAAAAGTGCCAAGTCAATCTATCTCAAAAGAAAAATATACATTATAAAGATAACCATGGAACTAAAATGTACAAAAACAATGTTACTGGCTCAATGCATGTAGTTATTGATCAGAGGAATGGCTCTTGTATATTAAGATGATTTCTAATAAGCATGTTTTAGTAACAATATTAAATACTTAACACAAATGTATTTCTATGCATTAGGAAGCCCTGTGTGGTTTGTGTAGACTCACTAAAGAAACAATTATTAAGGCCTGTCTGGTAATGTGCATTAGTGCATATTATCTCAAGAGGAATACTGTTGTTTATCATCGTAAATGGTAGTATAAAGAAAGAGTTCCACTTCAGTTAGCATAAAATAGCTGCTATGATGCACCAGAAGAGAGCCACTGTGTGAAAGCGTCCACTCCTCGGCGTACAGGTCCAAAGTAAAATTCCACGTTTTGTGAGAAGTCCACGCACACATTAGAGTACGCCTCTCCAACGAGACAATAAAGAGCAGTCCCACCCATGCTAATCACCACGGTAGCCAGACACAAGAGGAGAAGGACAAGGCAAGAGTTTCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU537570 True 1586 lncRNA 0.33 2 10207072 10208692

Neighbor

gene id symbol gene type direction distance location
CI01000325_10183659_10190907 SNAP25, SNAP25.S, SNAP25A, SN25A coding upstream 15464 10183659 ~ 10191608 (+)
CI01000325_10143735_10150373 ANKEF1, ANKEF1A coding upstream 56499 10143735 ~ 10150573 (+)
CI01000325_10127601_10139309 EMILIN1A coding upstream 66187 10127251 ~ 10140885 (+)
CI01000325_10090866_10091109 NA coding upstream 115846 10090866 ~ 10091226 (+)
CI01000325_10077265_10086696 MCM3 coding upstream 119800 10077265 ~ 10087272 (+)
CI01000325_10250179_10252706 NA coding downstream 40675 10249367 ~ 10253153 (+)
CI01000325_10256815_10257312 NA coding downstream 48123 10256815 ~ 10257886 (+)
CI01000325_10266709_10324239 CDC42BPA coding downstream 56910 10265602 ~ 10324253 (+)
CI01000325_10348845_10351323 FBXO16 coding downstream 140153 10348845 ~ 10351428 (+)
CI01000325_10370275_10385142 NA coding downstream 161353 10370045 ~ 10386291 (+)
G468348 NA non-coding upstream 10042 10195365 ~ 10197030 (+)
G468256 NA non-coding upstream 195725 10009872 ~ 10011347 (+)
G468276 NA non-coding upstream 286507 9920354 ~ 9920565 (+)
G468275 NA non-coding upstream 288007 9918814 ~ 9919065 (+)
G468354 NA non-coding downstream 13299 10221991 ~ 10222221 (+)
G468377 NA non-coding downstream 24693 10233385 ~ 10236165 (+)
G468400 NA non-coding downstream 194500 10403192 ~ 10403456 (+)
G468440 NA non-coding downstream 309532 10518224 ~ 10518552 (+)
G468453 NA non-coding downstream 364068 10572760 ~ 10573192 (+)
CI01000325_08732866_08734588 NA other upstream 1472520 8732514 ~ 8734758 (+)
G466752 NA other upstream 1631862 8574116 ~ 8575210 (+)
G466219 NA other upstream 2720665 7482036 ~ 7486407 (+)
G466227 NA other upstream 2892260 7312083 ~ 7314812 (+)
G466236 NA other upstream 3202417 7003617 ~ 7004655 (+)

Expression


Co-expression Network