XLOC_013299 (tshz3a)


Basic Information

Item Value
gene id XLOC_013299
gene name tshz3a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 14731784 ~ 14743659 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00026305
CAAGATTGCTCTGCTTCTGAGCTATCAGGTCATGATGTTGACAGTGAATCTCACATAAGTGAATCAAGTGAACCCACATCAGATGCAGAGAGTACCACAATCAAAAATGAGGAGGCCACAAAAGACTTTATAAAAGACAGTTCTGAAAATTCTGTATGCATTACTGACAGCCTTGAACAGATGAAGGCTATTTACAAAAGCTTTCTCAATAATCCCTATTGGTCCTTTTTGAGCTTGAATTCCCCTCAGTCTTATGCAGATGAACAACCGGCCAGTAGCAGTGGAAGCAGTAGCAGCAACAGCAGTCCTGGACGCACCTGCTATGACTGGCATCAGTCTGCTATTGCAAAGACACTCCAACAGGTCTCTCAAAAACCACCTATAGCACTTGAACCAAGTATTTTCTCAACTGTGCAGCTCTACCGACAAAGCACTAAACTCTATGGTTCCATCTTTACTGGTGCAAGCAAGTTCCACTGCAAAAGCTGCAGTGCAGCTTATGACACGCTTCTTGATCTCACAGTTCACATGAATGAAACCGACCACTACCGTGATGACAACCTCGAAAGTGCTAGTAAGAGTGGCAAGTCTTGGTCCAAGCCACGCAAGCGTTCTCTTTTGGAGATGGAGGGGAAGGAAGATGCCCAGAAAGTCCTTCGATGTATGTACTGCGGACACTCTTTTGAATCCTTGCAAGACCTCAGCGTGCACATGATAAAAACTAAGCATTACCAGAAGGTTCCTCTGAGAGAGCCAAGAACGGCAATTGCTGCTAAAGTCGTGTCCTCATTCAGGAAGAGGGTTCCAGTGGAGCTGGATGTTGCAAAATCTTTGCACACTACAGAGCAGACAAGAAGTCCCAATGAAGGGCACACCAGGGATATTCTTCAGATGTACTCTGAACAAAATATCAAAGATGACTTGGATCAAAAGACAACAAGCCGTGGTGTACACTTCAAGTCTCAGAATTTGAAATGTTTGGAGTGTGGGATTTCACATGACTCTTTGCAGCAGCTGAGTGCTCACATGATGTTGACTGGTCACTTTTTAAAAGTCACCCAATCATTGCAAAAGACAGACAAAACTCCTCATCCCAAAAGTAAGTCTGAGAAGTCTCTGTCAGAGACAACATGTTCTTCCCCTCTTGCAGCCACAAGAATTTTGGAGTCATCATCCTACTCATCCATTGCAACTGGAGACCACAAGAACAAGACACAAGAAATTACCTCTCAGAAAAGCAGTGAGTCCAAGGAGTCTGCAAATGTAAATGATGTTAGGCAGAAATTGGGTCCATCAGCAAAAACGGATTACTTAACCGAAGATGATCTAAAGGAGAGTCCTAAAATGGATTTTGATATTCTTAAATCACTGGAGAATACAGTAACATCAGCCATTAACAAAGCACAGAAGGGTGCCCCGAGCTGGGGTGGTTACCAGAGCATTCATGCAGCTTATCAGTTACGAAACCATTTAAAGCCTGCTCTGCACAACCCAGGCTATATTTCTTCCTTAAAACAATCATCCAGTAGTCAGGAAGTCCAGTCCTTAGACAAGAGTAATTTGATTCCTCCAAGTACTCAACCAAGTTCTTCATCAACCACAGTTCAAGTCAGTGAGGTGGATGAACTTGAGATGAATGTAACAGAAAAAGATGCTGAAGTAGACAGAAAATTGAAAGATCTAAATGGGCAGGGATCCCCACATCCACAGCTGCTAAATTTGAAAGGGAAATCACTGATGCTAAAATCTCCAAGTCCTGAGAGCACTGTTACATCAATGAGCAAGATCACTGAAGGTAAAACAGAGGAAAAAGAAACTCGGAAGCACAAACAAGACCCAACCTCCACTTCAAATCTGTATGATGATTCTAGTTTACTCTCTGCCCAGCCTGAGCCAAAACAACCCTCTGTCAGCCCTCTAAGTGCCCTTCAGTCTGTTATGAACCTTCATCTCGGTAAAGCTGCCAAACCGGTAAGGCCTGTCCAGGACCCTATGAGTATGCTTCTCAGGATGAGCAACAGCATGGCGGAAAGGGCCGCTCTTGCCGGTCCATCTGGACACTCAACGAAACTTAGCCAGTTACATTCCAACTGCCATGAAATTTGCAGAGACCAGCCGATAGACTTGTCCAAAGGTAAAAATGAACAGTACCTTACAACTGCCTCTGTCCCAGGCAAAGCTTTGAGCTCCTCTATATCTGGTGCATCTGTGAGTGAATCAAATAGTCCCAAAATCTTCACACCAGTAAGTCCTTTGCATGAAAATGCTCTCTCTGACATCTCCGACATGTTACGCAATCTCTCAGACTCTAGAGTTTCGAAGCCACCAACACTTCTATGTAGGCCAGAGCAGTCAGAAATTGAGGGTTCTCGTACTTCAGAAGAGGCAGAGGATACGTCCATAGTGCACAAACGTAAAGGTAGGCAGTCGCACTGGAAACCCCAGCACTTGCTGATTTTGCAGGCTCAGTTCACGTCCTGCCTCAGGCAGACAGCTGATGGAAAGTATGTGATATCAGACTTGAGCTCCCAGGAAAGGATGGTCATATCACACATAACTGGTCTGTCTATGACAACCATCAGCCACTGGCTTGCCAATGTGAAATATCAGCTGAGACGAACAGGCAGAACAAAGTTCATAAAGAATGTTGACTCAGGACACCCAGTTTTCTACTGTAGTGAATGTGCAACACAGTTTCAAGCTCGTTCTACATACATCTGTCACCTTGAGTCTCACCTTGGTTTTAAAATGAAAGACTTGGCTAAAATTACGTCCAAGGATATCAACCGGAAGATTCCGAAGCATTCTAAAAGCACTCCCATAAAACCTGCGCTTCCTGCTGTATCGCCAGCTAGAGGATGTCAGGAGCAACTGCTACCAGTGCCAGCACTGTAA
>TCONS_00026306
TTCCTGTCAGTGTAAGCGGTCTTGTTAATGCGCTCTTAAGTGACATATTGGCAGTGTCTCAAAACCTTGTGAGCTGAGCTGCCTACCAAGACTGCGTTATATGTGCGTGGGAGTGACCGACAGGACCGTCTGCTGTTATTTAACTGTTTGTCAGGGCACACATGAATGATGTCTCCGGTCGCTGCGTCACGGCTTCACGCCATAAGCGTTATATCGAGATAAAACGGCGCGTAACTTCTATTAACTTCTAACGAATTCGTAACTCCAGCGTTCGAATCCGAGCTCTTGTGTTCTATGTAACTATTTTGAACGTTTCCAAACGCGTGAACGCCCCCTTTCTGCGTTTTGAGGGAAGAGGAATCATTTGCCGCGGACTTTTGAGTGACGTGACAAACTCGTAGCGCGGCGAGGCGTTCCTGTCCTGCCGTGCAGTTTCCCCTCATCACTCTAGCGGACGGGCTTTAAACAAAGACTAACAGACGGAGCACCTGGGCTTTCTCCTATGCCTCATAACGCCAAGTGTCGTAGCTTTTGTGACCGCGCTGTAGTGTTGTTTAATGGTGACACGGTTAATTGGGAGCCTGTTTAGTAGAAAATCTTTTCAGGTTGCGTATTTACAGACACAATCTGCGCGTAAATATGCCGAGGAGAAAACAGCAGGCGCCGAAACGAGCTGCAGCTTATGATTCAGAGAATGGTAAGGAGACAGTGGTACAGACTGAAGGCACTGAAAGTGTTTGCCCGGTGACCAAGGAAAATCCACAGGGTGAAAATGATTTGGGAGAAGACTTCAAAAACCCAATGGATGAACAAGATTGCTCTGCTTCTGAGCTATCAGGTCATGATGTTGACAGTGAATCTCACATAAGTGAATCAAGTGAACCCACATCAGATGCAGAGAGTACCACAATCAAAAATGAGGAGGCCACAAAAGACTTTATAAAAGACAGTTCTGAAAATTCTGTATGCATTACTGACAGCCTTGAACAGATGAAGGCTATTTACAAAAGCTTTCTCAATAATCCCTATTGGTCCTTTTTGAGCTTGAATTCCCCTCAGTCTTATGCAGATGAACAACCGGCCAGTAGCAGTGGAAGCAGTAGCAGCAACAGCAGTCCTGGACGCACCTGCTATGACTGGCATCAGTCTGCTATTGCAAAGACACTCCAACAGGTCTCTCAAAAACCACCTATAGCACTTGAACCAAGTATTTTCTCAACTGTGCAGCTCTACCGACAAAGCACTAAACTCTATGGTTCCATCTTTACTGGTGCAAGCAAGTTCCACTGCAAAAGCTGCAGTGCAGCTTATGACACGCTTCTTGATCTCACAGTTCACATGAATGAAACCGACCACTACCGTGATGACAACCTCGAAAGTGCTAGTAAGAGTGGCAAGTCTTGGTCCAAGCCACGCAAGCGTTCTCTTTTGGAGATGGAGGGGAAGGAAGATGCCCAGAAAGTCCTTCGATGTATGTACTGCGGACACTCTTTTGAATCCTTGCAAGACCTCAGCGTGCACATGATAAAAACTAAGCATTACCAGAAGGTTCCTCTGAGAGAGCCAAGAACGGCAATTGCTGCTAAAGTCGTGTCCTCATTCAGGAAGAGGGTTCCAGTGGAGCTGGATGTTGCAAAATCTTTGCACACTACAGAGCAGACAAGAAGTCCCAATGAAGGGCACACCAGGGATATTCTTCAGATGTACTCTGAACAAAATATCAAAGATGACTTGGATCAAAAGACAACAAGCCGTGGTGTACACTTCAAGTCTCAGAATTTGAAATGTTTGGAGTGTGGGATTTCACATGACTCTTTGCAGCAGCTGAGTGCTCACATGATGTTGACTGGTCACTTTTTAAAAGTCACCCAATCATTGCAAAAGACAGACAAAACTCCTCATCCCAAAAGTAAGTCTGAGAAGTCTCTGTCAGAGACAACATGTTCTTCCCCTCTTGCAGCCACAAGAATTTTGGAGTCATCATCCTACTCATCCATTGCAACTGGAGACCACAAGAACAAGACACAAGAAATTACCTCTCAGAAAAGCAGTGAGTCCAAGGAGTCTGCAAATGTAAATGATGTTAGGCAGAAATTGGGTCCATCAGCAAAAACGGATTACTTAACCGAAGATGATCTAAAGGAGAGTCCTAAAATGGATTTTGATATTCTTAAATCACTGGAGAATACAGTAACATCAGCCATTAACAAAGCACAGAAGGGTGCCCCGAGCTGGGGTGGTTACCAGAGCATTCATGCAGCTTATCAGTTACGAAACCATTTAAAGCCTGCTCTGCACAACCCAGGCTATATTTCTTCCTTAAAACAATCATCCAGTAGTCAGGAAGTCCAGTCCTTAGACAAGAGTAATTTGATTCCTCCAAGTACTCAACCAAGTTCTTCATCAACCACAGTTCAAGTCAGTGAGGTGGATGAACTTGAGATGAATGTAACAGAAAAAGATGCTGAAGTAGACAGAAAATTGAAAGATCTAAATGGGCAGGGATCCCCACATCCACAGCTGCTAAATTTGAAAGGGAAATCACTGATGCTAAAATCTCCAAGTCCTGAGAGCACTGTTACATCAATGAGCAAGATCACTGAAGGTAAAACAGAGGAAAAAGAAACTCGGAAGCACAAACAAGACCCAACCTCCACTTCAAATCTGTATGATGATTCTAGTTTACTCTCTGCCCAGCCTGAGCCAAAACAACCCTCTGTCAGCCCTCTAAGTGCCCTTCAGTCTGTTATGAACCTTCATCTCGGTAAAGCTGCCAAACCGGTAAGGCCTGTCCAGGACCCTATGAGTATGCTTCTCAGGATGAGCAACAGCATGGCGGAAAGGGCCGCTCTTGCCGGTCCATCTGGACACTCAACGAAACTTAGCCAGTTACATTCCAACTGCCATGAAATTTGCAGAGACCAGCCGATAGACTTGTCCAAAGGTAAAAATGAACAGTACCTTACAACTGCCTCTGTCCCAGGCAAAGCTTTGAGCTCCTCTATATCTGGTGCATCTGTGAGTGAATCAAATAGTCCCAAAATCTTCACACCAGTAAGTCCTTTGCATGAAAATGCTCTCTCTGACATCTCCGACATGTTACGCAATCTCTCAGACTCTAGAGTTTCGAAGCCACCAACACTTCTATGTAGGCCAGAGCAGTCAGAAATTGAGGGTTCTCGTACTTCAGAAGAGGCAGAGGATACGTCCATAGTGCACAAACGTAAAGGTAGGCAGTCGCACTGGAAACCCCAGCACTTGCTGATTTTGCAGGCTCAGTTCACGTCCTGCCTCAGGCAGACAGCTGATGGAAAGTATGTGATATCAGACTTGAGCTCCCAGGAAAGGATGGTCATATCACACATAACTGGTCTGTCTATGACAACCATCAGCCACTGGCTTGCCAATGTGAAATATCAGCTGAGACGAACAGGCAGAACAAAGTTCATAAAGAATGTTGACTCAGGACACCCAGTTTTCTACTGTAGTGAATGTGCAACACAGTTTCAAGCTCGTTCTACATACATCTGTCACCTTGAGTCTCACCTTGGTTTTAAAATGAAAGACTTGGCTAAAATTACGTCCAAGGATATCAACCGGAAGATTCCGAAGCATTCTAAAAGCACTCCCATAAAACCTGCGCTTCCTGCTGTATCGCCAGCTAGAGGATGTCAGGAGCAACTGCTACCAGTGCCAGCACTGTAA

Function

symbol description
tshz3a Predicted to enable DNA binding activity and DNA-binding transcription factor activity, RNA polymerase II-specific. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within negative regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in anterior neural rod; brain; hindbrain neural keel; and hindbrain neural rod. Orthologous to human TSHZ3 (teashirt zinc finger homeobox 3).

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0010468 regulation of gene expression biological_process
GO:0045892 negative regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003682 chromatin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-100322-1 Predicted to enable DNA binding activity and DNA-binding transcription factor activity, RNA polymerase II-specific. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within negative regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in anterior neural rod; brain; hindbrain neural keel; and hindbrain neural rod. Orthologous to human TSHZ3 (teashirt zinc finger homeobox 3).

Ensembl:

ensembl_id ENSDARG00000087394

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00026305 False 2895 mRNA 0.44 1 14731784 14734678
TCONS_00026306 True 3705 mRNA 0.45 2 14731784 14743659

Neighbor

gene id symbol gene type direction distance location
XLOC_013298 pdf coding downstream 40057 14688643 ~ 14691727 (-)
XLOC_013297 si:dkey-238o13.4 coding downstream 53848 14671789 ~ 14677936 (-)
XLOC_013296 hsbp1b coding downstream 394326 14334123 ~ 14337458 (-)
XLOC_013295 mlycd coding downstream 456981 14233553 ~ 14274803 (-)
XLOC_013294 BX950204.1 coding downstream 1187417 13544250 ~ 13544367 (-)
XLOC_013300 NA coding upstream 20244 14763903 ~ 14765883 (-)
XLOC_013301 mtss1la coding upstream 28815 14772474 ~ 14836862 (-)
XLOC_013302 mapk12a coding upstream 101010 14844669 ~ 14860435 (-)
XLOC_013303 selenoo1 coding upstream 119748 14863407 ~ 14879135 (-)
XLOC_013304 trabd coding upstream 141886 14885545 ~ 14901480 (-)
XLOC_013384 BX323829.1 misc upstream 4798443 19542102 ~ 19542231 (-)
XLOC_013293 BX890576.1 non-coding downstream 1253562 13477102 ~ 13478222 (-)
XLOC_013291 BX511124.1 non-coding downstream 1444133 13281654 ~ 13287651 (-)
XLOC_013288 NA non-coding downstream 1617466 13077843 ~ 13114318 (-)
XLOC_013286 CT573465.1 non-coding downstream 1786053 12945617 ~ 12945731 (-)
XLOC_013308 BX649610.1 non-coding upstream 292492 15036151 ~ 15036269 (-)
XLOC_013310 NA non-coding upstream 444358 15188017 ~ 15191812 (-)
XLOC_013319 BX928740.1 non-coding upstream 844428 15588087 ~ 15588201 (-)
XLOC_013321 CR854977.1 non-coding upstream 1132003 15875662 ~ 15875780 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000013_07119401_07124434 TSHZ3A coding CI01000013 null 7119401 ~ 7124627 (+)