CI01000327_03762467_03766334 (CHMP4C, CHM4C)


Basic Information

Item Value
gene id CI01000327_03762467_03766334
gene name CHMP4C, CHM4C
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000327
NCBI id null
chromosome length 4453825
location 3762306 ~ 3767632 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000327_03762467_03766334.mRNA
ACGTTTTTGTATTTTTTCTTCATCAGATTCCAGTCTGCTCTCTCTGGATCCAAACACAGTAAATAAAAACCTCCTTCTGTCTGAGAGGGACAGAGTGGTTACTGACACTAAAACAGTCCAGCTGCTCATTCACAATAAAATAGAGACAATTCTCCCAGTAGTGTCCAGCCACTGTAGAATAGGAGTGCATGTGAATCACAGTGCAGGAACTCTGTCCTTCTACAGCGTCTCTGACACAATGACCCTCATCCACAAAGTCCAGACTACATTCACTCGTCCCCTCTATTCTGGGTTTGGGGTGAATCCAGACTCATCAGTGAAACTGTTTTGTTCTTATCAATAATATAATTAAAGCCCTTTACTGAAAACTCAAATCAATAAATTAGCACATATATTATTGTATATTATTACACATCTCTCTGGAAAACTTTGATCTGGTCAATTGCAGCATTCAGTAGTCAAATTTTTCTGAAGGAAGGATAACGGATCACTGATATAGGAAACCTATACATAGCTTGTTTCTGTCTCACTGCGGTGTCTTCAAGTATAAGACAATAAAAAGTAAAAATATAGGAGATACATTGTAGCTATCTCATAGGAGAAAACTGTAAAACATTTAAGTACTTTAATGTTCTTGTCCATTTAATGCCTAATGACTTCACAATGAAAGTTAAATATGAACATGTTAATTAAAATGTTACATTTTCACAGAAATTATTTTTTTTCTAAATAGATGTGACAACTTGAAACTGTCTTTTTGTTTGTTTGTTTATTTATTTATTTATTTATTTATTTATTTATTTTCATTAAATGCCTATGATATTGTATGATTGGTCTTAATACCACCAGAATATTGAATAATGGAATAAAGAATATTAGAAAACTGACTTATTCCATTTGTTTATTTTGACTAGAAAAGACTATAGTGTCAGTCGACTGGATTATATGAGTGTCGAGTGACGAATCGCATTGCTGTATACTCAGAATAGAGGAATTATTATTTATACCTGACCAATGAGAGACAATATTCGGGCTACCTTGCCACGCCCATTGTGTGACTATATTCTGTCGGCTGATCCTATTTCAATGGGCGTGTCTTCAGAGACATTATTGTGGATCAATTTACGTGCGCACAGGTTGGTGTTGAATTTCAGGAAGAGTAACGTTGGCTTATGTTGGTGTTTTGAATTGAATCTGAAAAGCAGACTGTCAAGAATTGCCGCTTTCTCTTCAAGATCCTATCTGTGTACAATTTTAAGCACGTTGGATCTTTAATTACAATCAATACCTTCGAAAAAATGAGTAAAATTTCAAAGATGTTTAAAGTGAGCTCTTCAAGCTCATCCAGCTCAAGGCCCAGTTCTAGTTCTGGATCCAGTTCTAGATCTAAGCACCGGTCCCGGTCTGGTCCATCGCCACAGGAGGCCATCAACAGACTGAGAGAGACAGAGGCCATGTTAACTAAAAAACAGGAATACCTGGAGAGCAGAATCGAACAGGAGCTCACCATTGCCAAGAAGAATGGAACCAAAAACAAGAGAGCTGCACTTCAGGCTCTTAAGAGGAAGAAACGTTTCGAGCAGCAGCTGACACAGATCGACGGGACCCTGTCCACTATTGAGTTCCAGCGAGAGGCCCTTGAGAATGCCACCACAAACACAGAGGTTCTGAAGAACATGGGTTATGCAGCTAAAGCCATCAAAGAGGTTCACCAGAACATAGATCTGGACAAAATTGACTCCCTCATGCAGGACATTACAGAACAACAAGAAGTAGCTCAGGAGATCAGTGATGCTATCTCAAAACCTTTTGGTGATCAGTTTGATGAGGATGAATTGTTGGCAGAGCTGGCAGAGTTGGAACAGGAAGAACTAGAACAAAGTATGAAGAATATGGACAGATTACCAAGTGCACCAACCACCAAACTGCCCAGCACAAGACCAAGCCACCATGCAACCTCCAAGAAGAGAGTGGAGGATGATCATGACATGAAGAGGTTGGCTGCCTGGGCTTCATAAGCAGCAGTGCACACACAAACGCTCTTTCTTCTTTCTACTTTTTATTCACTTACACTTTTAGCTCTATATCCTGCAAAGAATTGCAAGAGCTTTTTGTAAAAAAAAAAATGTAAAAAAAAAGAGAAGAGAAATTAAGCTAAACTTTTGTATTTTGTATTAAA

Function

symbol description
chmp4c Predicted to be involved in late endosome to vacuole transport via multivesicular body sorting pathway and vesicle budding from membrane. Predicted to act upstream of or within vacuolar transport. Predicted to be part of ESCRT III complex. Predicted to be active in cytoplasmic side of plasma membrane and multivesicular body. Orthologous to human CHMP4C (charged multivesicular body protein 4C).

NR:

description
charged multivesicular body protein 4c

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG:

id description
K12194 CHMP4A_B, SNF7, VPS32A_B; charged multivesicular body protein 4A/B

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000327_03762467_03766334.mRNA True 2179 mRNA 0.38 5 3762306 3767632

Neighbor

gene id symbol gene type direction distance location
CI01000327_03758271_03761244 NA coding downstream 1062 3758026 ~ 3761244 (-)
CI01000327_03662022_03727071 ASAP1 coding downstream 35186 3661863 ~ 3727120 (-)
CI01000327_03599848_03637906 FAM49B.L, FAM49BB, FAM49B coding downstream 124004 3599712 ~ 3638302 (-)
CI01000327_03371465_03383332 ANKHA coding downstream 378974 3371446 ~ 3383332 (-)
CI01000327_03335973_03338345 NA coding downstream 423656 3335186 ~ 3338650 (-)
CI01000327_03784319_03785354 NA coding upstream 16687 3784319 ~ 3785354 (-)
CI01000327_03815452_03901112 MYRIP coding upstream 47365 3814997 ~ 3901493 (-)
CI01000327_03977537_04002191 NA coding upstream 209277 3976909 ~ 4003013 (-)
CI01000327_04030403_04035178 ACAD11 coding upstream 262766 4030398 ~ 4035178 (-)
CI01000327_04076770_04104992 ACAD11 coding upstream 308607 4076239 ~ 4105119 (-)
G472179 NA non-coding downstream 14379 3744355 ~ 3747927 (-)
G472202 NA non-coding downstream 255680 3506230 ~ 3506626 (-)
G472110 NA non-coding downstream 391889 3367962 ~ 3370417 (-)
G472132 NA non-coding downstream 422036 3339986 ~ 3340270 (-)
G472216 NA non-coding upstream 2939 3770571 ~ 3771083 (-)
G472249 NA non-coding upstream 11177 3778809 ~ 3779370 (-)
G472245 NA non-coding upstream 31654 3799286 ~ 3799867 (-)
G472284 NA non-coding upstream 238758 4006390 ~ 4006663 (-)
G472224 NA non-coding upstream 379165 4146797 ~ 4151898 (-)
G470330 NA other downstream 3488011 273732 ~ 274295 (-)
G472251 NA other upstream 14064 3781696 ~ 3782668 (-)
G472470 NA other upstream 628458 4396090 ~ 4396430 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_023328 chmp4c coding NC_007135.7 CM002908.2 11070110 ~ 11076400 (-)