XLOC_023328 (chmp4c)


Basic Information

Item Value
gene id XLOC_023328
gene name chmp4c
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 11070110 ~ 11076400 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00046146
GTGGTGCAATTTACGTGAGCAGTGCGCACAGGTGTTGAATTTCAGGAAGAGGTTGGGTTATGTTGTTTTGAATTGAGTCGAATCTGAAAAGCAAACTGTCAAGAATTGCCACGTTCTCTTGGGATCCTAGCTTTATATTTTAAACAAGTCGGTTCCTGATCTGTAATTTCAAGCCTATcttaaaaatgagtaaaatttCTAAAATGTTTAAGGTGAGCTCTTCAAGCTCATCCAGCTCCAGGTCCAGTTCTAGCTCTGGATCCAGTTCTAAATCTAAGCACCGGTCTCGGTCCGGTCCATCGCCGCAGGAGGCCATCAACAGACTGAGAGAGACGGAGGCGATGTTAACTAAAAAACAGGAATACCTGGAGAGCAGAATCGAGCAGGAAATCGTGATCGCCAAGAAGAATGGCACCAAAAACAAAAGAGCCGCACTTCAAGCTCTTAAGAGGAAGAAACGTTTTGAGCAGCAACTGACCCAGATTGATGGGACACTGTCAACTATTGAGTTCCAGCGAGAGTCCCTTGAGAATGCCACCACAAACACAGAAGTCCTGAAGAACATGGGATACGCCGCTAAAGCTATCAAAGGCGTTCATGAGAAAATAGATTTGGATAAGATTGACTCCCTCATGCAGGACATTACCGAACAACAGGAAGTAGCTCAGGAGATCAGTGATGCCATCTCACAACCTTTCGGTGACCAGTTTGATGAGGATGAGTTGTTGGCAGAACTGGCCGAGTTGGAACAGGAGGACTTGGAAGAAAGTATGAAGAGCATGGGCAGATTACCAAGCGCACCAACCCACAAACTGCCCAGCACAAGACCAAGCCACAGGGCAACCTCAAAGAAGAGAGTGGAGGATGATCATGATATGAAGAGGTTGGCTTCCTGGGCATCATAAACAACCGTACACACAAACTCAATCTTACCTGAAGCTTACTTGCACTCGTAGCTCTGCTGTTTATCCTGCCAGTAATTTGTTAAATAGTAAgatgtttttgaaagaaaaaatagAAACATTTGTGAAGGGAAACATTTGTATACAAAATAATTACTTTGTGGTGGTCTTGAAGATTAAGGATTACCTTGCTTTGTGTAAATAGTATTGTTTTATGTGAAggatattaaaatttaatttttttttaattaaatgtaaatgtagaataCTGGGGTTTGGGTGAAAATTAAACTCatgaaatgtgaaaaaa

Function

symbol description
chmp4c Predicted to be involved in late endosome to vacuole transport via multivesicular body sorting pathway and vesicle budding from membrane. Predicted to act upstream of or within vacuolar transport. Predicted to be part of ESCRT III complex. Predicted to be active in cytoplasmic side of plasma membrane and multivesicular body. Orthologous to human CHMP4C (charged multivesicular body protein 4C).

GO:

id name namespace
GO:0006900 vesicle budding from membrane biological_process
GO:0007034 vacuolar transport biological_process
GO:0032511 late endosome to vacuole transport via multivesicular body sorting pathway biological_process
GO:0005771 multivesicular body cellular_component
GO:0000815 ESCRT III complex cellular_component
GO:0009898 cytoplasmic side of plasma membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG:

id description
ko04144 Endocytosis
ko04217 Necroptosis
ko04131 Membrane trafficking
ko03400 DNA repair and recombination proteins
ko04147 Exosome

ZFIN:

id description
ZDB-GENE-050417-389 Predicted to be involved in late endosome to vacuole transport via multivesicular body sorting pathway and vesicle budding from membrane. Predicted to act upstream of or within vacuolar transport. Predicted to be part of ESCRT III complex. Predicted to be active in cytoplasmic side of plasma membrane and multivesicular body. Orthologous to human CHMP4C (charged multivesicular body protein 4C).

Ensembl:

ensembl_id ENSDARG00000007418

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00046146 True 1212 mRNA 0.42 5 11070110 11076400

Neighbor

gene id symbol gene type direction distance location
XLOC_023327 CR753886.1 coding downstream 873 11058151 ~ 11069237 (-)
XLOC_023322 asap1b coding downstream 12805 10897768 ~ 11057305 (-)
XLOC_023326 AL840641.2 coding downstream 21550 11048446 ~ 11048560 (-)
XLOC_023325 AL840641.1 coding downstream 58559 11011436 ~ 11011551 (-)
XLOC_023324 dre-mir-7147 coding downstream 121965 10948064 ~ 10948145 (-)
XLOC_023329 myrip coding upstream 35713 11112113 ~ 11325849 (-)
XLOC_023330 acad11 coding upstream 273930 11350330 ~ 11446166 (-)
XLOC_023331 BX005057.1 coding upstream 335422 11411822 ~ 11411941 (-)
XLOC_023332 pxdc1b coding upstream 374677 11451077 ~ 11467549 (-)
XLOC_023333 prpf4bb coding upstream 393411 11469811 ~ 11506064 (-)
XLOC_023665 dre-mir-735 misc upstream 27101561 38177961 ~ 38178027 (-)
XLOC_023323 AL840641.3 non-coding downstream 164824 10905172 ~ 10905286 (-)
XLOC_023320 NA non-coding downstream 570208 10497369 ~ 10499902 (-)
XLOC_023335 NA non-coding upstream 797937 11874337 ~ 11875212 (-)
XLOC_023337 CU929203.2 non-coding upstream 1052105 12128505 ~ 12129456 (-)
XLOC_023338 CR855257.1 non-coding upstream 1078707 12155107 ~ 12156644 (-)
XLOC_023339 NA non-coding upstream 1520138 12596538 ~ 12601729 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000327_03762467_03766334 CHMP4C, CHM4C coding CI01000327 null 3762306 ~ 3767632 (-)