XLOC_023329 (myrip)


Basic Information

Item Value
gene id XLOC_023329
gene name myrip
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 11112113 ~ 11325849 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00046147
CGCGGATATTGATTTCACGCTTCATCTCAAAAGTCTGTAAGGACGAACAATTGTCATTCCAGCATCCTAACCTTGAACCGTTTACCTGTGAAGCACTGATGGGGCGTAAACTGGACCTGTCGGGTCTCAGCAATAATGAAGCGGAGCATGTTCTTAGAGTGGTACAGAGAGACATGCAACTTCGTAAGAAGGAAGAGGAGAGACTCAGTGAAATGAAGCAGGAGCTGGAGGAGGAGGGCAGTCGCTGTTTGCTTTTATCTAAGCAGCAGAAGTTCAACGAGCACTGCTGCATCCGTTGCTGCTCTCCCTTCACCTTCCTGCTCAACCCAAAGCGCCAGTGTCTGGACTGCCACTACAACATCTGCAAATCTTGCTGCTCTTACAGCCAGAGCGAGAGGGGCTACATCTGTGCTGCCTGCCAAAAGAGCAGgcattTGAGGACACAGTCTCTGGAATGGTTCTACAATAATGTGAAGAGTCGGTTTAAGAGATTTGGAAGTGCCAAAGTGTTGAAGACCCTCTACAGGAAACACATCATCGAAAGAGGAGCGTTATCTGAGTTACCAGagGTGAGCGCTCATGAAGGGAGTAATGATAATGGCAGCATTTGTGATGGCAGTGACTCCACGCTCTACAAGCAAAGTGAAGGTCACAGCATGGCAGACACACTTACGGTTGCTCTCCGTGTGGCAGAGGAGGCGATAGAGGAAGCTATTGCTAAAGCGGAGAACTACAAAGACAGTCTGgAGAAACAGAACGAGGCTCGTTATTTGCATGAGCACAAGGAAGAGCTCATAGAGGAACTTGCCACAACAATTGTTCAAAAAATTATTCAGAGGGGAAAGCGGCCGGAGATACAAGAAGAGTATGAGTTTGTATGGCCTCAGAATCAGAAAAGTGAGCTACCATCTCCTACCTCAACACAAAACCCACTTGCAACGCAGAATTCACACTCCACCTCTCAGCCAGGCGCAGTAGCCCAGTCTGACATAAGTAAGAGGTCAAGATCAGCGTACTCGAGTGACGATTCTCCAGAAAAGGGCCCTGAGGTGGGCATGGCCCCAGGGGTTCCAAAGAGCACTGAGGTAGAGACAGACATACAAAATTACTCATCACTCAGGAGGGAGTCCAGAGCATTATCACTTCCTGGATGGAAGAGTGTTGACCGCCTTGAAAACTCCAGTGCATCTTCAGTCCTGCAGTCCCCTGATGGTAACTGGATTGCCCTGCAGAGCTCCCAGCATTCCCGGCCCAGCCTGCTGACTAAGCGCAAAAGCCTCGTTTTCAGTGTGCTTGAGAAAGAATCAGGCGTGGTATCTGCGTATGATGAAATGGGCTCAGATTCAGACCCTGAGGATCAGGGTGGATGGGGCGCTGCCTTGTTACAGTTTCGCAGACGTCTCTCTGATGAAACATACTATACTGACTCTCAACACGACCCTGAATGGACATTTACTCAACATCCACCCATTACATCACCCTCTTCGGGTCAATACACCAACACTGAAACCCTGAACTCTGACTCAGAGACATCTCCTTCCCCGTCGACTCGAGCCCGTAGAGCACCCGTGATGAAAAAAGGGCCACCCGAAACACACCTATATCCTTACTACAGGCACCCTGCAGACATCGTAGCTTTGCCTCAGTTGAAGCCAGATGTCCTCGATGTGAACTTTAATCCCCACTTGGGTGGGGACAGTAGTGATGGGGAGGAGCGGAGCGAGCAGGTCAAAAGATCACGGAGGCGTAGAAAGAGCAAACGCGAGACATCAGAGCACAGCCGAGCACATAATGCACTGTACAGTGCTGCCACTGCGGAGAACAGTACTGTCCTCCTCAATGCCATGATGATGCGCCGCCAACAGAGCCAGGAGAACACAGTCCCTCTGAATCACCAAACTCCAGACTCTGTGACCTCTCCAGACATTCTGACCTTTAACAACATGTCTCCTGAACCTGAATATCAGAACACATTAGCTCATAACTCCAGTGCTGCCAGCCTGCCATTGCTGAGCCAGCTAGGCTCCAACAATCCAGGGTTCGCCCCTCAGGACCCTTTGCTCAGGGCCTTCCCAGTTAATGAAACACTGGAAGAGGAGCTGAAATACAAACTCAGTGAGCTGATTGGCCAAGTCAGTGAGAGGGATGTAAAATCATCGGATTTTGAACCAATCAGTGAAGTGGGCAACAAGCAAGAGGACAGAGTAAGTGAGAAAGACAGTGGGAAACTAAGACCCAAGGAGAGGCGGGAGAGCAAGCGGGAAAGTAAATTGAGGGAAATGGAGAAGCAAAGTGAAAGACAAACAGTTAAACTGATGGATACAAGTGATGCTGTGAGACAGATAAATATTGAGAGACAAATGAAGAAAGAGAGGGAGCGACAGAGAGATATTGAAAGACAGGTAGAAAGAGAGcgggagagacaaagagagctaGAGAAACAAATTGAGAAGGACAGAGAAAGGCGGCGAGAGATCGAGATGCAGGTCGAGAAGAAAcaggaaagacagaaagaaatggAGAAACAACTGAAACAAGAACAAGAGAGACAATCAGAGATTGAGCGAGACttagaaaagaaaaggaaaagcaTACGAatggaaaaagagaaattagtgAGTGTGAAATCCAGAGAACGTGAACAGGAATTGGTGAGAGAAACAGGGGAAGCATCAGGTAGAGCGTTGAAGCGAAATAAGAGTTTGGAGGAATACAAATATGAAACCGAGAAAGAAAAGGTGAATAAAATATCTGCACAGAGAAGCAAATCAGAAACGTCAGCAGAAAGAAAGAAGCTTGATATAAAGACAGCAAGGTCTTTAACAGCATCTCCAGAAAGCACCCCCTGCGGTCTGGAGGAGCCAAAGTCTCCATCAGAGAAGTACTCTGCTGCGTCTTTATGCAGCATCACCACAGAGGTTCTGAAGGTCCTAAACGCCACAGAGGATTTGCTTGGTGAAGCAGAATGCAAAGTTTATGATCCCTCTCCAGCTGGCACACACATATGCTCAGGTCCTGTCAACAAGAAGCTGGACCATCAACTTACTAAGATGGAGGAAAATGTGTATTTGGCAGCAGGGGCTGTGTACAGCCTAGAGGGGGCGCTGGGTGACTTAGAAGAATGTGCACGCAGCATCAGCAGCTCCACCACAGACACAGAACTAGCCTTCTTGGAAGACCAGGTTGCCACTGCTGCTGCTCAGGTGCAGCAGTCAGAGCTCCAGATATCAGATATTGAGGCAAGAATATCCGCTCTCAAAACTGCAGGTCTGAATGTATCTGCGTGTACACGTTTTTCCAAGTACAAATCTAAACCTATGcCACAAACACTAGACTCTTCTCGCCATCAGAGGAGAAAGCTACCTGCTCCTCCTCTCAGAACCATGTTATCAGAAAAGGAAGTCAAATCTGAGTCACAGATGAGATACGTAAGGCCATGGCAAGAGGATGTATGACTCTGTGATCCTCTAATAAGCTGTGTGGCTCCACATCACTCTGCTTCTGAATGCTAGGACCATCAGGCTGTTCCACGCTAGTGCCTTGCTCCAACTTCTGGTCCTCCAATTTGATTGGCACTAATGACTGATCACAAACCGTGTTGGGTTGATCTCACTTCTTACCCATAGAACTTTACCAAACCTTGGAACACCTCCAGTAACCAGGGGATTCAATTATTTCTCTCTGCCTTAATGGAGACCAAACTCCTACAACAAAGATCACAGAGGGTTGTAATTGTAGATTTAAATCGATGTAATTACTTGTATGTGTAACTGATGCACAGTAGTAAATGTTAACAATCTGGGACGTCACCTCCTgttctgtttttttatgtttgctgGGTCGTGTATATGTTTGAAATCTGTATGTTAGATATGTTACTAAAGAAAACCTTGTGTTTATTTTCGCAAAAAGAGGCTGGAGCACATTCGGTAAAAGTCTTAAATGTGTGAAGTGTCAGAAAGTACACACTAAATACCTGCAGGACCTGTTTGATGTCACGTTTCTATTCTTTTCAAATATGGCACAAATATCTCAGGCTTCTTTTTTTCTGAAGGTCATTGTTTACTTAAAGGTGTATTCAACGTCTACAACAACTGTGAAATTCATCAtgagttcatttttattttgttaaaaaaatgtaaagaaaaagaaaggaataaAGGTGTGGCACCGTGGCTCAATagttagcactgccacctcacagcaagaaggccgctggtttgagtcccaggtGGActagtaggcatttctgtgtggagtttggatgttttcTCCCTGTTCGTgtaggttttctccaggtgctccagtttcccccacagctcaaagacatgcactttaaataaatatgagtggcatccgctgtgtgaaacatatgctggaatagttggcggttcattctgctgtggcgacccctgacaaataagggattaagctaaaggaaaatgaatgaataaagatagATTATTATATGAAAGCACTTAACCACCCTGCCATATGAGGAGGTTAAAAGTGTGCCGCAATGAATTCTACACCCTTGTATTTAAACCAACCTCATATGTCTGATGATCTTTTGAAAGCATCAGATCACTGCCATCTCAGTAAACACTTCATACATAATTTGTTCTTTATTGCCTTTATTGTATGCATTTTAAGTTACAATCCACTTAACAGTGTATAGCTGAAATGATCATTATTTGAAATTCTATTACAATCAGTATTGTTTCTTAAGTGCAAATTGTTGTGCAGTTGAAAACCCTTGGGGATAGTTGTTATAACCATTATGGTACTATAGCTCAGTGTTAAACCTGCATGCTTGTTAAAAgacaatagacccttttcacgtttctgggtttctcagtagaaggcatcatagttgggtaaacttacagctcagtgaatgggagagtacaacaaatgactttttacaatcctatttacTGAAAtactccacaatggtgttatcaagactttcctgaaaaaggaaaaaaaaaatgtgtgagactgatgacggcagccagacgAAAGAATAATGTCAGATTTATTCTCAGACCCAttgacactgcattagaaacacctcacacaaGCAGCAATTCgtcttttgtaatttgatgcaaagatgaaataatacaatcataaattcatataaatgttcataggtttttttttatcaaaatattaaaaacttttaaagattTAGGATTATGATGGCCATTGAACACATTAatacagtcttgtgaaaagggtccataatcAAAAAGCCATACAAACAATGTGTTTGATCACAACAGTATGTTCCTACAGAGATAATCATCATATGTATTATAATTCCAACAGGTATGGATCGCTGTACCAGAATGCAAATCGCATAAGcttaaggggtagttcacccaaaaataaaaattgccatCCCTCAagtgattttaaacctttaagtgtttcttttttcAATTGACAACTaagaaagatatttttaaatttggaaacctgaaaaaacaaatactatggaagtcaatgaggtttccagcattttccaAAATAAGTTTTTATGACAACCACAGTGTAAGGGCCAGTCTCAATTCTGTTTTACCACTGAAGGCTTTTatcatgttattataataataatgtggcaataagctcctAACTATACTGTGTTTGTTTACACCGTGGACAAATTCaaaatgtaaacacacgaaaacaacattaacattatagcagacactgtaaaaagctcattcccaaccactagacttttctgacagggtattcgattGTCAtggagtgacagaatgttgtgggactactatacaggtgTTATTATTAGTGATtctagatagatatagataggtttttattttagcattttattttaaagcatgacagtaaaacagaAACGCGATGTGTTTATGTTATGAATgacgttatgaatgtattaaaacatgtgcttgttgtaaaaatttgaaataatgacaaaaatacttatttgtgcatctcctgacttccgtgaAAAGCCTTACTGTCATttttagatggtgtattctgggaaattttcttaccctttggttttgagtgtggtccttgtaaatctcagtttcaagggctagCTAGCCCTTCCACCTAGCCCTATGTCTGTAAGCTACAGAGAATTGGGACAACCCTTCCATTTCACATGAACGTGCAAAACGAGCGGTAGGTGGAAAGGGCAAGggctaaggcaggggtgtccaaactcaatcctggagggccggtctcctgcagattttagctccaacttgcctcaacacacctgcaaagatgtttctagaaagcctagtaagagcttgattagctagcccaggattgtctgattggggttggaactaaactttgcaggacaccggcgctccaggactgagtttggacatgcctgggcTAAGGGGTAgcattgggattgggcctaaataatgacataatttttagttttgggtgaactatcccctgtAAATGTATTATTGGGCAAGATTTATAGTGGTAAGCCAGGGGCTCTCTTTGAATACATTTAAGGaataatttatgaataatttaagaatattttttgCAGGCATGTCTATATTTTATGTACAACTGTGATATAGAAATACTGCATCATATTGTCTGTGCTGCATAGTGAGTAGTCAGATCAAGGAAAGCTGCGGTCACGCTGGACTTTtcccccatagactttcattcatacgcacgtgaatgggtcagaccggaaacgtaagctcgtgcaacaagtttcgcaattcactgcgttgcaaagttcaagcatggtgaactctgacctgcaaaatcacatcacttgactgcgtgagacaaaTCGATGATCAAAActtgacctctctggacagaaaattttaaatatggaccaatcgcttgcttttttaaatgtctgattactacagtattttcaaactctagtgtgaccgcagcttaagtttGATATTTTTAGTTACCTTTAAATATTCCACAGAACTGTCTTCTTGTTTTGAGTCAATAGAGAATAAATTAGTATGTTAAGATTCCATTTGAACCATACTTTGCCTTCTTCATTCTCTTCTCTACAAAGGAGCTATTCAGCTTTCATACTATCAAACGGGTCCTGCTCCTCGTTGTTGTCTATGGCAATGTCTGTGTATAGAAGCATGCATCACTTTGTTTCTAATAGATGTTAAGCAGAAAAAAAGTCCCATGAAAAGCACAGTCCTAAAATTTGAATTGTCTTACAGTGTCATGTATTTTTCTAATTGAATAGTCTAatgcatatttacatatgaatGAAATGTTATTCGGATATCAAAGACTCTTAACTGTTTTTTGGGGGTTGTCATGAATGAAAGGGCATTAGCTAATGTCAGAAAACTCTGTGTTTTAagcaaagtgt
>TCONS_00046148
AGCAGAAGTACTCTGCTGCGTCTTTATGCAGCATCACCACAGAGGTTCTGAAGGTCCTAAACGCCACAGAGGATTTGCTTGGTGAAGCAGAATGCAAAGTTTATGATCCCTCTCCAGCTGGCACACACATATGCTCAGGTCCTGTCAACAAGAAGCTGGACCATCAACTTACTAAGATGGAGGAAAATGTGTATTTGGCAGCAGGGGCTGTGTACAGCCTAGAGGGGGCGCTGGGTGACTTAGAAGAATGTGCACGCAGCATCAGCAGCTCCACCACAGACACAGAACTAGCCTTCTTGGAAGACCAGGTTGCCACTGCTGCTGCTCAGGTGCAGCAGTCAGAGCTCCAG
>TCONS_00046149
GCTTCATCTCAAAAGTCTGTAAGGACGAACAATTGTCATTCCAGCATCCTAACCTTGAACCGTTTACCTGTGAAGCACTGATGGGGCGTAAACTGGACCTGTCGGGTCTCAGCAATAATGAAGCGGAGCATGTTCTTAGAGTGGTACAGAGAGACATGCAACTTCGTAAGAAGGAAGAGGAGAGACTCAGTGAAATGAAGCAGGAGCTGGAGGAGGAGGGCAGTCGCTGTTTGCTTTTATCTAAGCAGCAGAAGTTCAACGAGCACTGCTGCATCCGTTGCTGCTCTCCCTTCACCTTCCTGCTCAACCCAAAGCGCCAGTGTCTGGACTGCCACTACAACATCTGCAAATCTTGCTGCTCTTACAGCCAGAGCGAGAGGGGCTACATCTGTGCTGCCTGCCAAAAGAGCAGgcattTGAGGACACAGTCTCTGGAATGGTTCTACAATAATGTGAAGAGTCGGTTTAAGAGATTTGGAAGTGCCAAAGTGTTGAAGACCCTCTACAGGAAACACATCATCGAAAGAGGAGCGTTATCTGAGTTACCAGagGTGAGCGCTCATGAAGGGAGTAATGATAATGGCAGCATTTGTGATGGCAGTGACTCCACGCTCTACAAGCAAAGTGAAGGTCACAGCATGGCAGACACACTTACGGTTGCTCTCCGTGTGGCAGAGGAGGCGATAGAGGAAGCTATTGCTAAAGCGGAGAACTACAAAGACAGTCTGgAGAAACAGAACGAGGCTCGTTATTTGCATGAGCACAAGGAAGAGCTCATAGAGGAACTTGCCACAACAATTGTTCAAAAAATTATTCAGAGGGGAAAGCGGCCGGAGATACAAGAAGAGTATGAGTTTGTATGGCCTCAGAATCAGAAAAGTGAGCTACCATCTCCTACCTCAACACAAAACCCACTTGCAACGCAGAATTCACACTCCACCTCTCAGCCAGGCGCAGTAGCCCAGTCTGACATAAGTAAGG

Function

symbol description
myrip Predicted to enable actin binding activity and myosin binding activity. Predicted to act upstream of or within intracellular protein transport. Predicted to be located in perinuclear region of cytoplasm and transport vesicle. Predicted to be active in cortical actin cytoskeleton. Orthologous to human MYRIP (myosin VIIA and Rab interacting protein).

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0048471 perinuclear region of cytoplasm cellular_component
GO:0030133 transport vesicle cellular_component
GO:0031410 cytoplasmic vesicle cellular_component
GO:0030864 cortical actin cytoskeleton cellular_component
GO:0005737 cytoplasm cellular_component
GO:0017022 myosin binding molecular_function
GO:0005515 protein binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003779 actin binding molecular_function

KEGG:

id description
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-080123-1 Predicted to enable actin binding activity and myosin binding activity. Predicted to act upstream of or within intracellular protein transport. Predicted to be located in perinuclear region of cytoplasm and transport vesicle. Predicted to be active in cortical actin cytoskeleton. Orthologous to human MYRIP (myosin VIIA and Rab interacting protein).

Ensembl:

ensembl_id ENSDARG00000038814

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00046147 False 7399 mRNA 0.42 16 11112113 11325849
TCONS_00046148 False 350 mRNA 0.52 2 11124533 11127493
TCONS_00046149 True 981 mRNA 0.48 7 11150776 11309477

Neighbor

gene id symbol gene type direction distance location
XLOC_023328 chmp4c coding downstream 35713 11070110 ~ 11076400 (-)
XLOC_023327 CR753886.1 coding downstream 42876 11058151 ~ 11069237 (-)
XLOC_023326 AL840641.2 coding downstream 63553 11048446 ~ 11048560 (-)
XLOC_023325 AL840641.1 coding downstream 100562 11011436 ~ 11011551 (-)
XLOC_023324 dre-mir-7147 coding downstream 163968 10948064 ~ 10948145 (-)
XLOC_023330 acad11 coding upstream 24481 11350330 ~ 11446166 (-)
XLOC_023331 BX005057.1 coding upstream 85973 11411822 ~ 11411941 (-)
XLOC_023332 pxdc1b coding upstream 125228 11451077 ~ 11467549 (-)
XLOC_023333 prpf4bb coding upstream 143962 11469811 ~ 11506064 (-)
XLOC_023334 gli3 coding upstream 202421 11528270 ~ 11821505 (-)
XLOC_023665 dre-mir-735 misc upstream 26852112 38177961 ~ 38178027 (-)
XLOC_023323 AL840641.3 non-coding downstream 206827 10905172 ~ 10905286 (-)
XLOC_023320 NA non-coding downstream 612211 10497369 ~ 10499902 (-)
XLOC_023335 NA non-coding upstream 548488 11874337 ~ 11875212 (-)
XLOC_023337 CU929203.2 non-coding upstream 802656 12128505 ~ 12129456 (-)
XLOC_023338 CR855257.1 non-coding upstream 829258 12155107 ~ 12156644 (-)
XLOC_023339 NA non-coding upstream 1270689 12596538 ~ 12601729 (-)

Expression


Co-expression Network