RNA id: TCONS_00046147


Basic Information

Item Value
RNA id TCONS_00046147
length 7399
RNA type mRNA
GC content 0.42
exon number 16
gene id XLOC_023329
representative False

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 11112113 ~ 11325849 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGCGGATATTGATTTCACGCTTCATCTCAAAAGTCTGTAAGGACGAACAATTGTCATTCCAGCATCCTAACCTTGAACCGTTTACCTGTGAAGCACTGATGGGGCGTAAACTGGACCTGTCGGGTCTCAGCAATAATGAAGCGGAGCATGTTCTTAGAGTGGTACAGAGAGACATGCAACTTCGTAAGAAGGAAGAGGAGAGACTCAGTGAAATGAAGCAGGAGCTGGAGGAGGAGGGCAGTCGCTGTTTGCTTTTATCTAAGCAGCAGAAGTTCAACGAGCACTGCTGCATCCGTTGCTGCTCTCCCTTCACCTTCCTGCTCAACCCAAAGCGCCAGTGTCTGGACTGCCACTACAACATCTGCAAATCTTGCTGCTCTTACAGCCAGAGCGAGAGGGGCTACATCTGTGCTGCCTGCCAAAAGAGCAGgcattTGAGGACACAGTCTCTGGAATGGTTCTACAATAATGTGAAGAGTCGGTTTAAGAGATTTGGAAGTGCCAAAGTGTTGAAGACCCTCTACAGGAAACACATCATCGAAAGAGGAGCGTTATCTGAGTTACCAGagGTGAGCGCTCATGAAGGGAGTAATGATAATGGCAGCATTTGTGATGGCAGTGACTCCACGCTCTACAAGCAAAGTGAAGGTCACAGCATGGCAGACACACTTACGGTTGCTCTCCGTGTGGCAGAGGAGGCGATAGAGGAAGCTATTGCTAAAGCGGAGAACTACAAAGACAGTCTGgAGAAACAGAACGAGGCTCGTTATTTGCATGAGCACAAGGAAGAGCTCATAGAGGAACTTGCCACAACAATTGTTCAAAAAATTATTCAGAGGGGAAAGCGGCCGGAGATACAAGAAGAGTATGAGTTTGTATGGCCTCAGAATCAGAAAAGTGAGCTACCATCTCCTACCTCAACACAAAACCCACTTGCAACGCAGAATTCACACTCCACCTCTCAGCCAGGCGCAGTAGCCCAGTCTGACATAAGTAAGAGGTCAAGATCAGCGTACTCGAGTGACGATTCTCCAGAAAAGGGCCCTGAGGTGGGCATGGCCCCAGGGGTTCCAAAGAGCACTGAGGTAGAGACAGACATACAAAATTACTCATCACTCAGGAGGGAGTCCAGAGCATTATCACTTCCTGGATGGAAGAGTGTTGACCGCCTTGAAAACTCCAGTGCATCTTCAGTCCTGCAGTCCCCTGATGGTAACTGGATTGCCCTGCAGAGCTCCCAGCATTCCCGGCCCAGCCTGCTGACTAAGCGCAAAAGCCTCGTTTTCAGTGTGCTTGAGAAAGAATCAGGCGTGGTATCTGCGTATGATGAAATGGGCTCAGATTCAGACCCTGAGGATCAGGGTGGATGGGGCGCTGCCTTGTTACAGTTTCGCAGACGTCTCTCTGATGAAACATACTATACTGACTCTCAACACGACCCTGAATGGACATTTACTCAACATCCACCCATTACATCACCCTCTTCGGGTCAATACACCAACACTGAAACCCTGAACTCTGACTCAGAGACATCTCCTTCCCCGTCGACTCGAGCCCGTAGAGCACCCGTGATGAAAAAAGGGCCACCCGAAACACACCTATATCCTTACTACAGGCACCCTGCAGACATCGTAGCTTTGCCTCAGTTGAAGCCAGATGTCCTCGATGTGAACTTTAATCCCCACTTGGGTGGGGACAGTAGTGATGGGGAGGAGCGGAGCGAGCAGGTCAAAAGATCACGGAGGCGTAGAAAGAGCAAACGCGAGACATCAGAGCACAGCCGAGCACATAATGCACTGTACAGTGCTGCCACTGCGGAGAACAGTACTGTCCTCCTCAATGCCATGATGATGCGCCGCCAACAGAGCCAGGAGAACACAGTCCCTCTGAATCACCAAACTCCAGACTCTGTGACCTCTCCAGACATTCTGACCTTTAACAACATGTCTCCTGAACCTGAATATCAGAACACATTAGCTCATAACTCCAGTGCTGCCAGCCTGCCATTGCTGAGCCAGCTAGGCTCCAACAATCCAGGGTTCGCCCCTCAGGACCCTTTGCTCAGGGCCTTCCCAGTTAATGAAACACTGGAAGAGGAGCTGAAATACAAACTCAGTGAGCTGATTGGCCAAGTCAGTGAGAGGGATGTAAAATCATCGGATTTTGAACCAATCAGTGAAGTGGGCAACAAGCAAGAGGACAGAGTAAGTGAGAAAGACAGTGGGAAACTAAGACCCAAGGAGAGGCGGGAGAGCAAGCGGGAAAGTAAATTGAGGGAAATGGAGAAGCAAAGTGAAAGACAAACAGTTAAACTGATGGATACAAGTGATGCTGTGAGACAGATAAATATTGAGAGACAAATGAAGAAAGAGAGGGAGCGACAGAGAGATATTGAAAGACAGGTAGAAAGAGAGcgggagagacaaagagagctaGAGAAACAAATTGAGAAGGACAGAGAAAGGCGGCGAGAGATCGAGATGCAGGTCGAGAAGAAAcaggaaagacagaaagaaatggAGAAACAACTGAAACAAGAACAAGAGAGACAATCAGAGATTGAGCGAGACttagaaaagaaaaggaaaagcaTACGAatggaaaaagagaaattagtgAGTGTGAAATCCAGAGAACGTGAACAGGAATTGGTGAGAGAAACAGGGGAAGCATCAGGTAGAGCGTTGAAGCGAAATAAGAGTTTGGAGGAATACAAATATGAAACCGAGAAAGAAAAGGTGAATAAAATATCTGCACAGAGAAGCAAATCAGAAACGTCAGCAGAAAGAAAGAAGCTTGATATAAAGACAGCAAGGTCTTTAACAGCATCTCCAGAAAGCACCCCCTGCGGTCTGGAGGAGCCAAAGTCTCCATCAGAGAAGTACTCTGCTGCGTCTTTATGCAGCATCACCACAGAGGTTCTGAAGGTCCTAAACGCCACAGAGGATTTGCTTGGTGAAGCAGAATGCAAAGTTTATGATCCCTCTCCAGCTGGCACACACATATGCTCAGGTCCTGTCAACAAGAAGCTGGACCATCAACTTACTAAGATGGAGGAAAATGTGTATTTGGCAGCAGGGGCTGTGTACAGCCTAGAGGGGGCGCTGGGTGACTTAGAAGAATGTGCACGCAGCATCAGCAGCTCCACCACAGACACAGAACTAGCCTTCTTGGAAGACCAGGTTGCCACTGCTGCTGCTCAGGTGCAGCAGTCAGAGCTCCAGATATCAGATATTGAGGCAAGAATATCCGCTCTCAAAACTGCAGGTCTGAATGTATCTGCGTGTACACGTTTTTCCAAGTACAAATCTAAACCTATGcCACAAACACTAGACTCTTCTCGCCATCAGAGGAGAAAGCTACCTGCTCCTCCTCTCAGAACCATGTTATCAGAAAAGGAAGTCAAATCTGAGTCACAGATGAGATACGTAAGGCCATGGCAAGAGGATGTATGACTCTGTGATCCTCTAATAAGCTGTGTGGCTCCACATCACTCTGCTTCTGAATGCTAGGACCATCAGGCTGTTCCACGCTAGTGCCTTGCTCCAACTTCTGGTCCTCCAATTTGATTGGCACTAATGACTGATCACAAACCGTGTTGGGTTGATCTCACTTCTTACCCATAGAACTTTACCAAACCTTGGAACACCTCCAGTAACCAGGGGATTCAATTATTTCTCTCTGCCTTAATGGAGACCAAACTCCTACAACAAAGATCACAGAGGGTTGTAATTGTAGATTTAAATCGATGTAATTACTTGTATGTGTAACTGATGCACAGTAGTAAATGTTAACAATCTGGGACGTCACCTCCTgttctgtttttttatgtttgctgGGTCGTGTATATGTTTGAAATCTGTATGTTAGATATGTTACTAAAGAAAACCTTGTGTTTATTTTCGCAAAAAGAGGCTGGAGCACATTCGGTAAAAGTCTTAAATGTGTGAAGTGTCAGAAAGTACACACTAAATACCTGCAGGACCTGTTTGATGTCACGTTTCTATTCTTTTCAAATATGGCACAAATATCTCAGGCTTCTTTTTTTCTGAAGGTCATTGTTTACTTAAAGGTGTATTCAACGTCTACAACAACTGTGAAATTCATCAtgagttcatttttattttgttaaaaaaatgtaaagaaaaagaaaggaataaAGGTGTGGCACCGTGGCTCAATagttagcactgccacctcacagcaagaaggccgctggtttgagtcccaggtGGActagtaggcatttctgtgtggagtttggatgttttcTCCCTGTTCGTgtaggttttctccaggtgctccagtttcccccacagctcaaagacatgcactttaaataaatatgagtggcatccgctgtgtgaaacatatgctggaatagttggcggttcattctgctgtggcgacccctgacaaataagggattaagctaaaggaaaatgaatgaataaagatagATTATTATATGAAAGCACTTAACCACCCTGCCATATGAGGAGGTTAAAAGTGTGCCGCAATGAATTCTACACCCTTGTATTTAAACCAACCTCATATGTCTGATGATCTTTTGAAAGCATCAGATCACTGCCATCTCAGTAAACACTTCATACATAATTTGTTCTTTATTGCCTTTATTGTATGCATTTTAAGTTACAATCCACTTAACAGTGTATAGCTGAAATGATCATTATTTGAAATTCTATTACAATCAGTATTGTTTCTTAAGTGCAAATTGTTGTGCAGTTGAAAACCCTTGGGGATAGTTGTTATAACCATTATGGTACTATAGCTCAGTGTTAAACCTGCATGCTTGTTAAAAgacaatagacccttttcacgtttctgggtttctcagtagaaggcatcatagttgggtaaacttacagctcagtgaatgggagagtacaacaaatgactttttacaatcctatttacTGAAAtactccacaatggtgttatcaagactttcctgaaaaaggaaaaaaaaaatgtgtgagactgatgacggcagccagacgAAAGAATAATGTCAGATTTATTCTCAGACCCAttgacactgcattagaaacacctcacacaaGCAGCAATTCgtcttttgtaatttgatgcaaagatgaaataatacaatcataaattcatataaatgttcataggtttttttttatcaaaatattaaaaacttttaaagattTAGGATTATGATGGCCATTGAACACATTAatacagtcttgtgaaaagggtccataatcAAAAAGCCATACAAACAATGTGTTTGATCACAACAGTATGTTCCTACAGAGATAATCATCATATGTATTATAATTCCAACAGGTATGGATCGCTGTACCAGAATGCAAATCGCATAAGcttaaggggtagttcacccaaaaataaaaattgccatCCCTCAagtgattttaaacctttaagtgtttcttttttcAATTGACAACTaagaaagatatttttaaatttggaaacctgaaaaaacaaatactatggaagtcaatgaggtttccagcattttccaAAATAAGTTTTTATGACAACCACAGTGTAAGGGCCAGTCTCAATTCTGTTTTACCACTGAAGGCTTTTatcatgttattataataataatgtggcaataagctcctAACTATACTGTGTTTGTTTACACCGTGGACAAATTCaaaatgtaaacacacgaaaacaacattaacattatagcagacactgtaaaaagctcattcccaaccactagacttttctgacagggtattcgattGTCAtggagtgacagaatgttgtgggactactatacaggtgTTATTATTAGTGATtctagatagatatagataggtttttattttagcattttattttaaagcatgacagtaaaacagaAACGCGATGTGTTTATGTTATGAATgacgttatgaatgtattaaaacatgtgcttgttgtaaaaatttgaaataatgacaaaaatacttatttgtgcatctcctgacttccgtgaAAAGCCTTACTGTCATttttagatggtgtattctgggaaattttcttaccctttggttttgagtgtggtccttgtaaatctcagtttcaagggctagCTAGCCCTTCCACCTAGCCCTATGTCTGTAAGCTACAGAGAATTGGGACAACCCTTCCATTTCACATGAACGTGCAAAACGAGCGGTAGGTGGAAAGGGCAAGggctaaggcaggggtgtccaaactcaatcctggagggccggtctcctgcagattttagctccaacttgcctcaacacacctgcaaagatgtttctagaaagcctagtaagagcttgattagctagcccaggattgtctgattggggttggaactaaactttgcaggacaccggcgctccaggactgagtttggacatgcctgggcTAAGGGGTAgcattgggattgggcctaaataatgacataatttttagttttgggtgaactatcccctgtAAATGTATTATTGGGCAAGATTTATAGTGGTAAGCCAGGGGCTCTCTTTGAATACATTTAAGGaataatttatgaataatttaagaatattttttgCAGGCATGTCTATATTTTATGTACAACTGTGATATAGAAATACTGCATCATATTGTCTGTGCTGCATAGTGAGTAGTCAGATCAAGGAAAGCTGCGGTCACGCTGGACTTTtcccccatagactttcattcatacgcacgtgaatgggtcagaccggaaacgtaagctcgtgcaacaagtttcgcaattcactgcgttgcaaagttcaagcatggtgaactctgacctgcaaaatcacatcacttgactgcgtgagacaaaTCGATGATCAAAActtgacctctctggacagaaaattttaaatatggaccaatcgcttgcttttttaaatgtctgattactacagtattttcaaactctagtgtgaccgcagcttaagtttGATATTTTTAGTTACCTTTAAATATTCCACAGAACTGTCTTCTTGTTTTGAGTCAATAGAGAATAAATTAGTATGTTAAGATTCCATTTGAACCATACTTTGCCTTCTTCATTCTCTTCTCTACAAAGGAGCTATTCAGCTTTCATACTATCAAACGGGTCCTGCTCCTCGTTGTTGTCTATGGCAATGTCTGTGTATAGAAGCATGCATCACTTTGTTTCTAATAGATGTTAAGCAGAAAAAAAGTCCCATGAAAAGCACAGTCCTAAAATTTGAATTGTCTTACAGTGTCATGTATTTTTCTAATTGAATAGTCTAatgcatatttacatatgaatGAAATGTTATTCGGATATCAAAGACTCTTAACTGTTTTTTGGGGGTTGTCATGAATGAAAGGGCATTAGCTAATGTCAGAAAACTCTGTGTTTTAagcaaagtgt

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0048471 perinuclear region of cytoplasm cellular_component
GO:0030133 transport vesicle cellular_component
GO:0031410 cytoplasmic vesicle cellular_component
GO:0030864 cortical actin cytoskeleton cellular_component
GO:0005737 cytoplasm cellular_component
GO:0017022 myosin binding molecular_function
GO:0005515 protein binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003779 actin binding molecular_function

KEGG:

id description
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-080123-1 Predicted to enable actin binding activity and myosin binding activity. Predicted to act upstream of or within intracellular protein transport. Predicted to be located in perinuclear region of cytoplasm and transport vesicle. Predicted to be active in cortical actin cytoskeleton. Orthologous to human MYRIP (myosin VIIA and Rab interacting protein).

Ensembl:

ensembl_id ENSDART00000182485

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00046143 lncRNA downstream 60773 11048860 ~ 11051340 (-) True XLOC_023322
TCONS_00046847 lncRNA downstream 612211 10497369 ~ 10499902 (-) True XLOC_023320
TCONS_00047159 lncRNA downstream 836455 10269856 ~ 10275658 (-) True XLOC_023318
TCONS_00046846 lncRNA downstream 1115635 9995132 ~ 9996478 (-) True XLOC_023313
TCONS_00047158 lncRNA downstream 1128314 9982279 ~ 9983799 (-) False XLOC_023312
TCONS_00046848 lncRNA upstream 548488 11874337 ~ 11875212 (-) False XLOC_023335
TCONS_00047160 lncRNA upstream 548501 11874350 ~ 11874811 (-) True XLOC_023335
TCONS_00046160 lncRNA upstream 802656 12128505 ~ 12129456 (-) True XLOC_023337
TCONS_00047161 lncRNA upstream 1270689 12596538 ~ 12601729 (-) True XLOC_023339
TCONS_00047162 lncRNA upstream 1416087 12741936 ~ 12744908 (-) False XLOC_023341
TCONS_00046146 mRNA downstream 35713 11070110 ~ 11076400 (-) True XLOC_023328
TCONS_00046145 mRNA downstream 42876 11058151 ~ 11069237 (-) True XLOC_023327
TCONS_00046144 mRNA downstream 43833 11058151 ~ 11068280 (-) False XLOC_023327
TCONS_00046136 mRNA downstream 61386 10902136 ~ 11050727 (-) False XLOC_023322
TCONS_00046150 mRNA upstream 24481 11350330 ~ 11446166 (-) False XLOC_023330
TCONS_00046152 mRNA upstream 105909 11431758 ~ 11446156 (-) True XLOC_023330
TCONS_00046153 mRNA upstream 125228 11451077 ~ 11467549 (-) False XLOC_023332
TCONS_00046154 mRNA upstream 127787 11453636 ~ 11467004 (-) True XLOC_023332
TCONS_00046155 mRNA upstream 143962 11469811 ~ 11506064 (-) False XLOC_023333
TCONS_00046142 other downstream 63553 11048446 ~ 11048560 (-) True XLOC_023326
TCONS_00046141 other downstream 100562 11011436 ~ 11011551 (-) True XLOC_023325
TCONS_00046140 other downstream 163968 10948064 ~ 10948145 (-) True XLOC_023324
TCONS_00046137 other downstream 206827 10905172 ~ 10905286 (-) True XLOC_023323
TCONS_00046123 other downstream 735112 10349147 ~ 10377001 (-) False XLOC_023319
TCONS_00046151 other upstream 85973 11411822 ~ 11411941 (-) True XLOC_023331
TCONS_00046161 other upstream 829258 12155107 ~ 12156644 (-) True XLOC_023338
TCONS_00046184 other upstream 2283749 13609598 ~ 13609714 (-) True XLOC_023354
TCONS_00046187 other upstream 3207993 14533842 ~ 14536411 (-) True XLOC_023357
TCONS_00046200 other upstream 3888022 15213871 ~ 15213985 (-) True XLOC_023362

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000327_03815452_03901112.mRNA True 4193 mRNA 0.49 19 CI01000327 3814997 ~ 3901493 (-)