XLOC_023332 (pxdc1b)


Basic Information

Item Value
gene id XLOC_023332
gene name pxdc1b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 11451077 ~ 11467549 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00046153
GGCGTGAACAAGaaaacaatctctctctctctctctctctctctctctctctctctcgtgaatTCCTTGCATAGCGCTGTGTGTGGAAAAGAATGAAAAGGAAGGAGGAAAGGAGCGGTGACAGCTAAACAGTATAAATAggagttgttttgtttgtttgtttttttgtgattaGCTGATTAACAACCTTTAAAGGGATTGAAGCGACTCGTAGTCCGTTGTAATTTAAGTTGCACCAAACAGTTATAGGAACGCCTAAACTTTTTGACGGATATAGTTAGGTCGCTATATAAGCCTACTTCATATTTTGGAGTTCCCAGTTTGAATTTGTGCTATTCTTGCATATCCGCCCGCTACATTTGATGACGTTTACGAATCGAAACCGTAGGTTCCTTAAAACAAGATcttggattattatttttttttctctaaccTCTACACGAAGCCTATTTTCCACCAATTAAGTTGTATAAGCGCTGTTGAAGTTGAGCAGAAGGATAAATAGGCTACATCTATAACAGAATGCTGGAGTGAGGGCACTCGAGATGGCATCGGCGATTTTTGAGGGCACATCCCTGGTCAACATGTTCGTGAAAGATTGTTGGGTTAACGGGATTCGGAGGCTCATCATCAGAGGAGCGGAGGAGGAATTCTTTGATATAAGGACTGAATGGTCGGACAGAAACATTATTTACCTGCACAGAAGCTCTTCTGATTTAGGCAGACTTTTACAAAGACTCATGGAGTGTTTCCCCGAAGACAGGCGAGTTTTGTCAAAGTGTCCTCTGCTAGAAGGGCTTGTGAAGATTAAAGAAGCGAGGGATATTGAGACAAAGCTAAATGAAGTGGAGCGATTGTTGAAGGCCACTATATACATGCCTTGGAAGTTTTCTAGGTCAGAGGTTGTCTTAACATTCTTTGAACGCTCACCGCTAGACCAGGTTCTGAGGAATGACAACATCCACAAGATTCAGCCATGCTTTCAAAATCCAGTTAAGATTTCAGAGATCATGAGGTCTAATGGATTTTGCCTGGCGAACACAGAAACTATTGTGTTTGATGAGAGTGTTCCACTGGACAAAGAGAGACCATCCTCCACTGACTCAGCCCAGCACTCGTATGATGAGGATGGGAGAGAATCTTTGGATCATGTGGATCAAGACCTGAGCGATGATGATCCTGAGGCTTATGTCACTAACCTGTCATACTACCATCTGGTTCCTTTTGAAACTGACTTATTGGAGTGATGCTCACAGTTTAAAGGTGGTCATTTACAGCTGATCTCTGAACTCCACCTGACAGAGATATCCTGTGTGTAACTTCTGCTAGATGATGGGATGTGCTACAATTTATACTCactttcaattattcattttcttgttggcttagtccctttattaatccggagtcgccaaagcggaatgaaccgccgacttatccagcaagtttttttttttttacgcagcggatgcccttccagccgcaacccatctctggggaacatccacacacacattcacacacacaatttcaCCCCCCACAATTTCATCcacaacatccacacacacattcaccctacccaattcacctgtaccgcatgcctttggactgtggaggaaacccacgtgaaggcagggagaacatgcaaactcacacagaagcgccaactgagccgaggttcgaaccagcgacccttcttgctgtgaggcgacagcactacctactgcgccactgcctcgccctcaatTTCAGCTAGAATTACAAATTTGATGCCTGTTCATTCTTTAGTTTAGCACGCTGGGGCCATTATTCACATCAACTAGAACTTTTTTCTGTTTCCATTGCACATGAAAGGTGAGCAGCATCAATTTCTCACCAAATTCCCACAGACCCAATCAAAAGTACACAAGCATGAAACCATCATGCATAAAATAGCTAAATACAAGCAAACGGAATGATGGGAAACATGATTGGGGAAAATATTTCAAGCacaatttttatttgattatttcttaCTCCTgttggaataaaaataaatgaatgagaaccCAGTCCAGACGACTCAAACAAGCTGAATTGATTTATTGAGACTTGTTGGTTAGTCTGCAGCCATACAGTACAGCATCTTCAAGAAGTCCATGAGTCTGCAAGAGCCTGCAAGTGTCTCTTACAGGTCTGCAGTCTGCACAATTTATCACAAGTCTGAAAACAAGTCTACAATGAGTCTTGTCTATAAAATGATTTAGGAAGATGGGCAGTGTTGTAGGTGGagacataaaactaaaaaataaaactggcATGACTACTTTTAGTTGAAGATCTTGTTTTAGGGTCTTGAATAGACCCTGAGGTTTCACTTGATCAGCTTGAAAGTATCACCCACAGTCGTTGAGACCCTACCTTTAGCATTTGCTTCACTTTGGCTCAGCTCAAGCTCAGGAAACAAGAGGTTTATAATGTTTTCACACCCTAGCGAGAGTTTTGAATTAAATTAggtaattaaaaaccaaagaatataacttttttgtTATATACATAAATGTCACAGTTAATTTGACtagattatatacatttatatttccaCATTCTGTTCATTTAGATGGAGAAAGCAGGAGTTATGACCTGTACCACAAGCTGTTTAACATGTTAACAGAGCGTTGTCAAGTCTGCTGTTGGGTTGGTTGTCTGTTTTGAGAGAGTCTCACTCATTTTGCACATGACTCCTAGTATATTCCtacataaatatacagttgaagtcagaattatttgccccctgttaattttccccccaatttctgtttaacttagAGAAGATTTTTCTAAAAATCATAGGttaataactcaactctaataactgatttatttcatctttgccattatgacagtaaataatattttactatgtatattttaagacacttctataaagcttaaagtgacatttaaaggcttaactaggttaattagggtaactaggcaggttatggtaattaggcaagttgttgtataacgaaGGTttatagactattgaaaaaatatatatatagcttaaaggggttaataattttgaccttaaatgttttttgtttaatattaaaaactgcttttattctggctaaaataaaataggactttctccaggagaaaaaaatagtattcccttgctctgttaaacgttatttgggaaatatttaaaaaagaaaaaaattcaagggggggctaataattctgtcttcaactgtatacgtAAACACATAACTACCTGTAAAGCACTCAAATAGTAAGAATAAAACTATCACATGAGCAGGGAAGGAAGCTGAATTTGTGCTATTGAAGTATTTGGTCAAGCAATTTCAAGAGTTTGttaatactatttttaatataaagGTTTAAATATAACTATTTCATACGGTCTGTCACTGTTTTGCATACTTAATGATTCAGTATTATGTATAGTGTTTTTTTACTGTGGTCAAGGGCTGATGTGCATAATGTTATGTATTACAAATTGTTTGTATGGTGTAAATGTAAACAATTGGCatacattgtaaataatttgtaaataacaTGCCATGTAATATGTTgtacaaataatttgttttataaaaatgaaCTTGCCTCATGCTTTTGgctgctttttttctttaaacttcTTAGATTAGGttaaaacatgattttaaatGTTGATTAAGCAAACTATGTTGGACTTGTGGACAGCCAGCAGAGTTCTAGAGACCTGTTCTcacctttgtgtttgtttgagcaGGTAGTGATAGACGTTTCTTAAGGAGACTAAGACTTGC
>TCONS_00046154
ATGGCATCGGCGATTTTTGAGGGCACATCCCTGGTCAACATGTTCGTGAAAGATTGTTGGGTTAACGGGATTCGGAGGCTCATCATCAGAGGAGCGGAGGAGGAATTCTTTGATATAAGGACTGAATGGTCGGACAGAAACATTATTTACCTGCACAGAAGCTCTTCTGATTTAGGCAGACTTTTACAAAGACTCATGGAGTGTTTCCCCGAAGACAGGCGAGTTTTGTCAAAGTGTCCTCTGCTAGAAGGGCTTGTGAAGATTAAAGAAGCGAGGGATATTGAGACAAAGCTAAATGAAGTGGAGCGATTGTTGAAGGCCACTATATACATGCCTTGGAAGttacataataaaagtctttttaaaaaatcttctatTTTGATTTTTAAGTTTTCTAGGTCAGAGGTTGTCTTAACATTCTTTGAACGCTCACCGCTAGACCAGGTTCTGAGGAATGACAACATCCACAAGATTCAGCCATGCTTTCAAAATCCAGTTAAGATTTCAGAGATCATGAGGTCTAATGGATTTTGCCTGGCGAACACAGAAACTATTGTGTTTGATGAGAGTGTTCCACTGGACAAAGAGAGACCATCCTCCACTGACTCAGCCCAGCACTCGTATGATGAGGATGGGAGAGAATCTTTGGATCATGTGGATCAAGACCTGAGCGATGATGATCCTGAGGCTTATGTCACTAACCTGTCATACTACCATCTGGTTCCTTTTGAAACTGACTTATTGGAG

Function

symbol description
pxdc1b Predicted to enable phosphatidylinositol binding activity. Orthologous to human PXDC1 (PX domain containing 1).

GO:

id name namespace
GO:0035091 phosphatidylinositol binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-091204-294 Predicted to enable phosphatidylinositol binding activity. Orthologous to human PXDC1 (PX domain containing 1).

Ensembl:

ensembl_id ENSDARG00000040309

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00046153 False 3803 mRNA 0.38 5 11451077 11467549
TCONS_00046154 True 747 mRNA 0.43 5 11453636 11467004

Neighbor

gene id symbol gene type direction distance location
XLOC_023330 acad11 coding downstream 4911 11350330 ~ 11446166 (-)
XLOC_023331 BX005057.1 coding downstream 39136 11411822 ~ 11411941 (-)
XLOC_023329 myrip coding downstream 125228 11112113 ~ 11325849 (-)
XLOC_023328 chmp4c coding downstream 374677 11070110 ~ 11076400 (-)
XLOC_023327 CR753886.1 coding downstream 381840 11058151 ~ 11069237 (-)
XLOC_023333 prpf4bb coding upstream 2262 11469811 ~ 11506064 (-)
XLOC_023334 gli3 coding upstream 60721 11528270 ~ 11821505 (-)
XLOC_023335 NA coding upstream 406788 11874337 ~ 11875212 (-)
XLOC_023336 tm9sf1 coding upstream 420336 11887885 ~ 11908115 (-)
XLOC_023337 CU929203.2 coding upstream 660956 12128505 ~ 12129456 (-)
XLOC_023665 dre-mir-735 misc upstream 26710412 38177961 ~ 38178027 (-)
XLOC_023326 AL840641.2 non-coding downstream 402517 11048446 ~ 11048560 (-)
XLOC_023325 AL840641.1 non-coding downstream 439526 11011436 ~ 11011551 (-)
XLOC_023324 dre-mir-7147 non-coding downstream 502932 10948064 ~ 10948145 (-)
XLOC_023323 AL840641.3 non-coding downstream 545791 10905172 ~ 10905286 (-)
XLOC_023338 CR855257.1 non-coding upstream 687558 12155107 ~ 12156644 (-)
XLOC_023339 NA non-coding upstream 1128989 12596538 ~ 12601729 (-)
XLOC_023341 NA non-coding upstream 1274387 12741936 ~ 12746499 (-)

Expression


Co-expression Network