XLOC_023320


Basic Information

Item Value
gene id XLOC_023320
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 10497369 ~ 10499902 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00046847
cttaaatcattaaaattcgtttatcttaattaaccttgataagtatttagaactttttcttatttttgagtttgaaaaaatttaatctttcaagtaaggtgaacaattctgctgggtttaatttatacaaaatgtctctttaaagtttcattaactcaaaatctgtcagcccagtgattttgcgtctgacgtcatccaggttcacgtacgtgctcatgcttcattcgtttttttcaagatggcggatcggcctcgTTTCACACTACAaattgaaggtcgggtgttgctgactacagataggaactacaaggaaagtgaaacttcagctagaccttgagttcagtttacaacatgaagatcctgctttcaacatctgatcaacacctgattttcatctgagagtaccaacatgttacaaatgagaattttccccacaaattctttgcacaactggaccaccacctatttcatttgatgacaatttcaaggcaaacagcatccaaaactggcaagacagcagataccctggctaatcttttaaaggcttatgatgagcaggaactgcatgatgtcagttcatgacggatTACTcttatcagaggtcttttggtcttgctgcgtgagcgtgacttaagattctttaggaacaccctggtaagacttcattcattcttttcacaattaggcatgtttaataaaaagatg

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0016070 RNA metabolic process biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0071840 cellular component organization or biogenesis biological_process
GO:0034470 ncRNA processing biological_process
GO:0006364 rRNA processing biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0031290 retinal ganglion cell axon guidance biological_process
GO:0006396 RNA processing biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0000470 maturation of LSU-rRNA biological_process
GO:0042273 ribosomal large subunit biogenesis biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0048699 generation of neurons biological_process
GO:0034660 ncRNA metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0030684 preribosome cellular_component
GO:0032040 small-subunit processome cellular_component
GO:0030688 preribosome, small subunit precursor cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0070013 intracellular organelle lumen cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005634 nucleus cellular_component
GO:0031974 membrane-enclosed lumen cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043233 organelle lumen cellular_component
GO:0005730 nucleolus cellular_component
GO:0005488 binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0030515 snoRNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko00230 Purine metabolism
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase
ko03230 Viral genome structure
ko05164 Influenza A
ko05016 Huntington disease
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00046847 True 705 lncRNA 0.37 4 10497369 10499902

Neighbor

gene id symbol gene type direction distance location
XLOC_023319 ankha coding downstream 103092 10349147 ~ 10394277 (-)
XLOC_023318 NA coding downstream 221711 10269856 ~ 10275658 (-)
XLOC_023317 CR391965.1 coding downstream 241339 10255914 ~ 10256030 (-)
XLOC_023316 zgc:173856 coding downstream 476028 10018653 ~ 10021341 (-)
XLOC_023315 zgc:171474 coding downstream 482745 10010630 ~ 10014624 (-)
XLOC_023321 fam49bb coding upstream 292871 10792773 ~ 10897557 (-)
XLOC_023322 asap1b coding upstream 397866 10897768 ~ 11057305 (-)
XLOC_023323 AL840641.3 coding upstream 405270 10905172 ~ 10905286 (-)
XLOC_023324 dre-mir-7147 coding upstream 448162 10948064 ~ 10948145 (-)
XLOC_023325 AL840641.1 coding upstream 511534 11011436 ~ 11011551 (-)
XLOC_023665 dre-mir-735 misc upstream 27678059 38177961 ~ 38178027 (-)
XLOC_023310 NA non-coding downstream 622678 9870547 ~ 9874691 (-)
XLOC_023309 BX649325.1 non-coding downstream 784759 9712495 ~ 9712610 (-)
XLOC_023307 NA non-coding downstream 885013 9507674 ~ 9612356 (-)
XLOC_023326 AL840641.2 non-coding upstream 548544 11048446 ~ 11048560 (-)
XLOC_023331 BX005057.1 non-coding upstream 911920 11411822 ~ 11411941 (-)

Expression


Co-expression Network