RNA id: TCONS_00047162


Basic Information

Item Value
RNA id TCONS_00047162
length 2973
lncRNA type intronic
GC content 0.32
exon number 1
gene id XLOC_023341
representative False

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 12741936 ~ 12746499 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gaatgaaatgccaacttaacTACATGCCAACTTaaatacatccaatcagctcgcagtagaaaaaaaacaagccataAACACTGCTTTCTGATATTGGAActgtcacaatatgaaaaaaaaaaacggtcacaGCTTCCATTTCATGCAGACTGTAACAATTTAGTTATTGTGAGACTCAAGTCTCCTCTATTTTTGTATATACTTTTAATGAAATCGAAACCCTTATGTCTTTAAAGGATTTAATGAtgccaaacaatcaaaaactgTGGGCTAATAAAAATTATTCGTAAGAGCCTGTATTACTAGGTTCAGCAGTTATCTTGGAATGtcgtgactgaccaatcagaatcgatTAGTCCAGAGAGCTGTACAATGATGTATTACCATGCATGCATAATGAATGCCTTATAATATGTTGTAGCACCTGGTAAATAGTCATGCTGTAACTACAGTAAAACAAGTATTCATAGGAGTTTTAAAGCATGTataactttatattgtatatgtaAGTCTGATGCCAATAGATTTAATTCCTGACACAACTTGCAATGTCAATGAACTTATTGATGTTACTGTGAGTGTGAGGGGGAGGGTTTTTGGTGGGGATAGGTGTgcacattaaaagcattgcatgtaGCTCAGCTTCGATGAATTCAGAGTATATCCAGAGTTTAGGTGGAAAATGTTCTGATCAGTATTATTACTTGTAATAGTAAATTACGACACGGCACAGTGTAACATTGTTTATAAGGCATTATTCAAGCATTATAATACATTTAGAATATAAAGTGTGTGATCCCTAATCAATTCTCTGTTCCTTATGGAAAAGTGCTAAGAGTTGATGTTTTGCCCTTGGTGTACTTTTAAGATCTAGATATTGTCTCCATGAGCAAATATAACTGTCAGTGCTTCAGATCTTATCAGTGAGGACAATTTTGTTTGGGAGATCATTTAGTTTAAAGAACAAGTTTAAGGTAAAGTATGGTAATGGTAAAAGTtgatgctacactgtaaaaaatgaatctTGAGGCTtgtaaatttcattaaaaaaatttatgtggtcattaaaaataatgtgcatattttctttaaaaaaaaatatattctggATTAATTATAAAGTATTAAGAAGATTTTGCTAATACAATCAAGAGATaaatttcacttatttttttaagtaaaccagTGCAATTATTAGGCTTACTTTTAGAAACCAGTTAAGCTAATAAAATTGAGGAAAGATGGATTcacgttttttttaaagaaaattcacTCAATTATGCTGATTTGATTGAGATGTTTGCATTTGAATCTCAACAACGGCAGTGACCAGACGACATTTTGAAGAAGCAGATCAATTATAAGCATGCTAAGCTAAGAGGTAAGCCTTAACagtttatcatttttattgtcttaaaTAAGCTCTTTCATGAAAGACACTGCTGTTTAAGCTTGTTCGGGAGCCTAGTTTCTGCCATATGGGTACACGGGTATTTTTAAACACCCATTCCTATTTGAAATTGATTTGCTTTAATGCTCATTCTGAATTGTATATTTAAACTGAACAAATTATGTGCATTGTAATATTTAACAGCTCTGATCAGGCAACATTTAAGCGGGTGGACGAACAACAGTGATCTTGTTGGTTAGCCTAAGCTAAGCTATGTTAGCTATAGCCATTCAATGGGgtttatgcacagctagtgtttttccatttcataaggttccttttacagcattgatgatgtaatgttattaactatgtttatatataatactgtacaaaaatgcttatatttgtttgattaatttttCAGATTAATGAAGAAAATGTTCATAGTATTTTCCCACAAAAGAGGAGCAGTTTACTCAGGCAGATTCTGATAAAGAGAATGGGTGCCAAACAGCAGGtaatttataatgttatttgtgtattattatgattattaatattaggcAATTTTACTAATCTCTACACTTTTGTTGCATCAGACCTCACATTAAATCAGGGATAAGACGAGAGAAGCTGTCCTCTGTTGCTGGTCTATTTGTATGAAAAAGTGGAGCAGCTCATTCAGTAGTGCAATGTAAGTGTCTTAAACTAATTTAGATATTTGTGATTTTCAGAAAActgcattttatatttttgcatttttacaaaagacaaaaatatagCTCAGTCACAACATTGTTGAATGCACTATTCTTTGTATAAACTtggtgatatttattttttttagtatgcATTTTGAAAACACCCTGTCCATTATAAGTCAAAATACTTGTGTACTTGTGTCAGTCAACAATGTCTACTCAAACATTGAGGAATTAATGTTCACAGAGATACAAAGAAATGGTTTATTTCCTTAATGTATTTCCTTAAAGTGTTTTAGTAAATCTTAAATATTTGAAATTTACAATTGCATAGTTTCACaataataaacaatgtttatcTTACAGTGTGGGAATGCACAGAGGATTGCTGTCTGCCAGAGAGATGACCTACAATAAGGATTTCTGCATTGTCTTGGAGGATGAGCGAGTCATGGCTGGCTTGGAAAATCTAGAATTGCTGAACTGGATTTATACAAGTATTCCCCAAATTAAAATCACCCACAAACAAACTTTTAAGAAATTTTATTAACAAACTTTTGTTTCTGACACAAATTCACTGTTACAAACTTTTGGGAAATTGTTACTGCATCGACTGATTGATTTATTGTGTTGCTAATAATTTGAGATACAGCTTTTATACTGGTCTTATATGTTGTTCAATACACAAATTCTGTCAGAGTTTGTCTAAAATGTGATTATTCCTACAAAAGAAAgctgacagaatttttttttccattacagGAATAAAGAACTTTTTTTCAGAGCTTAACGTTGCTGTAACTTTTAAATAGATTTGTTTAACAAATTGTACCATTTTGTTATTAGTGGAACATGTAATAAAATGATTgttagcaaaaa

Function

GO:

id name namespace
GO:0015985 energy coupled proton transport, down electrochemical gradient biological_process
GO:0015986 ATP synthesis coupled proton transport biological_process
GO:0005753 mitochondrial proton-transporting ATP synthase complex cellular_component
GO:0044421 obsolete extracellular region part cellular_component
GO:0016469 proton-transporting two-sector ATPase complex cellular_component
GO:0005576 extracellular region cellular_component
GO:0045259 proton-transporting ATP synthase complex cellular_component
GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) cellular_component
GO:0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) cellular_component
GO:0098800 inner mitochondrial membrane protein complex cellular_component
GO:0015078 proton transmembrane transporter activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00047161 lncRNA downstream 140207 12596538 ~ 12601729 (-) True XLOC_023339
TCONS_00046160 lncRNA downstream 612480 12128505 ~ 12129456 (-) True XLOC_023337
TCONS_00046848 lncRNA downstream 866724 11874337 ~ 11875212 (-) False XLOC_023335
TCONS_00047160 lncRNA downstream 867125 11874350 ~ 11874811 (-) True XLOC_023335
TCONS_00046143 lncRNA downstream 1690596 11048860 ~ 11051340 (-) True XLOC_023322
TCONS_00047164 lncRNA upstream 313759 13058667 ~ 13125473 (-) True XLOC_023348
TCONS_00047165 lncRNA upstream 479340 13224248 ~ 13245885 (-) True XLOC_023349
TCONS_00046176 lncRNA upstream 507404 13252312 ~ 13255032 (-) False XLOC_023350
TCONS_00046181 lncRNA upstream 596156 13341064 ~ 13347517 (-) True XLOC_023351
TCONS_00047166 lncRNA upstream 610370 13355278 ~ 13357652 (-) True XLOC_023352
TCONS_00046162 mRNA downstream 52365 12629649 ~ 12689571 (-) True XLOC_023340
TCONS_00046159 mRNA downstream 833821 11889944 ~ 11908115 (-) True XLOC_023336
TCONS_00046158 mRNA downstream 836025 11887885 ~ 11905911 (-) False XLOC_023336
TCONS_00046157 mRNA downstream 920431 11528270 ~ 11821505 (-) True XLOC_023334
TCONS_00046155 mRNA downstream 1235872 11469811 ~ 11506064 (-) False XLOC_023333
TCONS_00046164 mRNA upstream 2469 12747377 ~ 12749116 (-) True XLOC_023342
TCONS_00046165 mRNA upstream 9105 12754013 ~ 12770357 (-) False XLOC_023343
TCONS_00046167 mRNA upstream 9462 12754370 ~ 12832499 (-) False XLOC_023343
TCONS_00046166 mRNA upstream 9462 12754370 ~ 12832499 (-) True XLOC_023343
TCONS_00046168 mRNA upstream 175111 12920019 ~ 12938922 (-) True XLOC_023344
TCONS_00046161 other downstream 585292 12155107 ~ 12156644 (-) True XLOC_023338
TCONS_00046151 other downstream 1329995 11411822 ~ 11411941 (-) True XLOC_023331
TCONS_00046142 other downstream 1693376 11048446 ~ 11048560 (-) True XLOC_023326
TCONS_00046141 other downstream 1730385 11011436 ~ 11011551 (-) True XLOC_023325
TCONS_00046140 other downstream 1793791 10948064 ~ 10948145 (-) True XLOC_023324
TCONS_00046184 other upstream 864690 13609598 ~ 13609714 (-) True XLOC_023354
TCONS_00046187 other upstream 1788934 14533842 ~ 14536411 (-) True XLOC_023357
TCONS_00046200 other upstream 2468963 15213871 ~ 15213985 (-) True XLOC_023362
TCONS_00046203 other upstream 3329181 16074089 ~ 16075115 (-) True XLOC_023365
TCONS_00046204 other upstream 3809961 16554869 ~ 16554983 (-) True XLOC_023368

Expression Profile

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