XLOC_023340 (pdcd6)


Basic Information

Item Value
gene id XLOC_023340
gene name pdcd6
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 12629649 ~ 12689571 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00046162
ACGCCTCTGCGTGAAGAATTTTTAGAGTCAGATTTAAGCAAGTTGAATCTCGCTGCTCATAGAGCATATCCGAGCGTTTACAGGAGCAAGCCGTGGACATGGCATATCATAACCAGTACAGACCGCCTCATTATAACAGCGCGCCGCCGGATCAGGGCTTTTTATGGAATATATTTCAGAGGGTTGATAAAGACAGGAGCGGGGCAATATCAGACACAGAGCTTCAGCAGGCATTATCAAATGGTACATGGACGCCTTTCAACCCTGTGACCGTCAGATCAATTATTTctatgtTTGATCGAGAGAACAAAGGTGGAGTGAATTTCAATGAGTTTGCTGGCGTTTGGAAGTACATTACAGACTGGCAGAACATCTTCCGCACCTACGACAGGGACAACTCAGGGTTTATCGACAAGAACGAGCTCAAACAGGCTCTCACCGGCTTTGGTTATCGTCTTTCAGATCAGTTCTACAACACACTGATAGAGAAATTTGACCGTCAGAAGAGAGGCCAAGTGGCTTTTGATGACTTCATTCAGTGCTGCATTGTACTACAGAGATTAACCGATGTTTTTCGGCGATACGACACAGATCAGGACGGCTGGATCCAGGTGTCTTACGAGCAGTATCTGTCAATGGTCTTCAACGTGGTATAGCACAACACACGCACGCCTGCAATCTCCTGTGCCAAACCAAATCTCGCTCCCCTGCAGTCTTCAGCAGAGACTAGTCAACACTACCCTCTACAGGACAACATGGGGACTAGATCTTTAGGACGTCATTCCGTCTGTCTCTCTGTTCATCGCTTAGTAGCCATATCATACTGCGTTATGGTCTTAACCATTATTATTGAAACAGTTATGGAATATCACTCCCTTCTGTGTTTAAGGAATGTTGACATTGTGAAAATCATATTAAGACTTGGTTGCATGCTTTATGATAAACCTCCTTAATGTCAAAGCATGAactaatgttttctatttttgtttagttttttttttttttttggctgatttCATGTTTACAATGAAATCCTGTGAAAGCAGGTTGTGTTTGCCATATAAGATCCTTTTATTTGGATTGACTGTCAGCTCTtccatatatttgtaaaaaaaaaaaatctatttttaatctGCACAATGTaattcaaacttttattttaggaaGGAGGTACATATGCTTTTGTATGCCTTTTTCATGCATGATGCCTTACAAAtgttaaaatggcaaaaaaaaaaaaggataactgttttattaaaaactggaACATGTTTGaaa

Function

symbol description
pdcd6 Predicted to enable calcium ion binding activity. Is expressed in notochord; pectoral fin cartilage; and pharyngeal arch 3-7 skeleton. Orthologous to human PDCD6 (programmed cell death 6).

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
ko02044 Secretion system
ko04990 Domain-containing proteins not elsewhere classified

ZFIN:

id description
ZDB-GENE-040426-1307 Predicted to enable calcium ion binding activity. Is expressed in notochord; pectoral fin cartilage; and pharyngeal arch 3-7 skeleton. Orthologous to human PDCD6 (programmed cell death 6).

Ensembl:

ensembl_id ENSDARG00000005220

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00046162 True 1278 mRNA 0.40 6 12629649 12689571

Neighbor

gene id symbol gene type direction distance location
XLOC_023339 NA coding downstream 27920 12596538 ~ 12601729 (-)
XLOC_023338 CR855257.1 coding downstream 473005 12155107 ~ 12156644 (-)
XLOC_023337 CU929203.2 coding downstream 500193 12128505 ~ 12129456 (-)
XLOC_023336 tm9sf1 coding downstream 721534 11887885 ~ 11908115 (-)
XLOC_023335 NA coding downstream 754437 11874337 ~ 11875212 (-)
XLOC_023341 NA coding upstream 52365 12741936 ~ 12746499 (-)
XLOC_023342 cox19 coding upstream 57806 12747377 ~ 12749116 (-)
XLOC_023343 ipo4 coding upstream 64442 12754013 ~ 12832499 (-)
XLOC_023344 pck2 coding upstream 230448 12920019 ~ 12938922 (-)
XLOC_023345 CR405710.1 coding upstream 264918 12954489 ~ 12958668 (-)
XLOC_023665 dre-mir-735 misc upstream 25488390 38177961 ~ 38178027 (-)
XLOC_023331 BX005057.1 non-coding downstream 1217708 11411822 ~ 11411941 (-)
XLOC_023348 NA non-coding upstream 369096 13058667 ~ 13125473 (-)
XLOC_023349 NA non-coding upstream 534677 13224248 ~ 13245885 (-)
XLOC_023352 NA non-coding upstream 665707 13355278 ~ 13357652 (-)
XLOC_023354 CR450741.1 non-coding upstream 920027 13609598 ~ 13609714 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000327_02599051_02613779 PDCD6, PDCD6.L coding CI01000327 null 2599051 ~ 2614063 (+)