CI01000327_04140716_04142767 (PRPF4B)


Basic Information

Item Value
gene id CI01000327_04140716_04142767
gene name PRPF4B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000327
NCBI id null
chromosome length 4453825
location 4139514 ~ 4142835 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000327_04140716_04142767.mRNA
ACTAATAATCTCAAAGATAATGCAAAAGTTATTCTCATCTTTTTTTTTTGCCATATTTGTCTCGCAGTATGAATCTGCGGGAAGTGCTAAAGAAGTATGGTAAAGACGTAGGGCTACACATCAAGGCAGTGCGGTCTTACAGTCAGCAGCTCTTTCTGGCCCTCAAACTACTGAAACGCTGCAACATCCTTCATGCTGACATCAAACCAGACAACATATTGGTAAATGAGTCAAAGACCATTCTTAAACTCTGTGATTTCGGCTCTGCGTCTCATGTCGCCGACAATGAAATCACTCCCTACTTAGTCAGCAGATTCTATAGGGCACCTGAAATTGTCATTGGTAAACCATATGATTATGGCATTGATATGTGGTCAGTCGGCTGTACCCTGTATGAGCTGTACACAGGGAAGATCCTGTTCCCTGGCTCCTCCAACAACCACATGCTGAAACTGGCCATGGATGTGAAGGGCAAGATGCCTAACAAGATGATCCGGAAAGGCTTGTTTAAAGACCAACATTTTGACCAGAACTTGAACTTCCTGTACATAGAGGTAGACAAAGTGACTGAAAGGGAGAAGGTAACTGTGATGAGCACTATTAACCCCACTAAAGACCTGCTTGCGGACATGATCGGAGGTCAGAGGTTACCTGAGGATCAAAGGAAAAAGGTCATGCAGCTGAAGGATCTGTTGGATGGGACTCTGATGCTGGACCCTGCTAAACGCATCAGCATCAACCAGGCCCTGCAGCACCCTTTCATTCAGGAGAAGATATGACACTTTCACCTCTGACATTTGACCGTCCATTGTTCCAGGACTGAGCCAACAGACTCCCAAATGAGAATGTTCGGAATCATCACAAGACTTTAAATTTTCTATTTTTATTCATGTTTTTCTAGTGATTTTTTTTTTTGTTTTTGTTTTTGTTTTTTTGCGCCCAGTCATTTAATTCAAATCTCTCAGAATGATCTTGTTTTTATTGTACATATGCACACATTGTCATTCAATGAGAGAGAGAGAGAAAGGCATGTTTAGTATCGGGCTTTGTCTTATTTAACTTCAGAAGTGACTGAACTGTGCAGAGCGCAAAGGTTAAAAGGTTAGTTGAGTTGTTCAGATATTGAAATATCTTGGCCAGCACATCAGAGGGGTATTTAAAGACCAATTATTTTTGACATGAGCAGATTATAATCCAAATGTGTCACTTTTGTTGACTGATTACATAAAAGGAATCAAAACTGAAGCCACTGGTTTAATCAGAGTGCACTGGTGTCAAACTGCTCATTCACCAGGTGATCAGAACTTTTGCTGGTTAGTAACTTCGTACAGTCTCCTTCCTATTGAAAACAATACACCATAGTTCATCACATACAGTTGTTTAAAATATTGGTTTTGGTGTAGTACATTTACCTCAAAGTGGTACTGTAGATCACACTAGAAATTTTCTTGTCTCATTTTATTGACTTTACAAGCCTGTCCTATTGAGAGATTGATTTTATGAATAATTTAATTTACAAGAACTTTTGAATTAAATCTTAGTAAGTGGATAAGTTGTCACTTTTAGACAGTCAGCTAAATGGCCAATTTGCCTCACTTCACTTTTTCCAAAGGTCTTGTTTTAATTCGAAATATCTACTTTTTGGTTCATTTGTTTCTAATGGTGTCCATCAGCAAACTGTTAGTACTAGTTATTTCAGAGGTTTGAATATTTGTATACAACTTCAGCATACCAGAAATTGCACCTGTTAAAATGTTTGTATTCAAAGTCCCTAAAGTAAAGGTTATCTGATATGAAGTGCCTCCCTTTTGTGACCGAATTGAACCATAATAGAAAGCCTCTCACAGATGGGTCCTGACAAACCGATGATCATTTATTTCACAATGTAAATACTTCATAGTTTTTGCTATGTAAAATGTTTTTTTTTTTTTTTTTTTCTATTTGAAAAATAAATTGTTGGGGTTTTTTGGGTCATAATAAA

Function

symbol description
prpf4b Enables RNA binding activity. Predicted to be involved in protein phosphorylation. Located in nuclear speck. Part of catalytic step 2 spliceosome.

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process

KEGG:

id description
K08827 PRPF4B; serine/threonine-protein kinase PRP4

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000327_04140716_04142767.mRNA True 1981 mRNA 0.38 5 4139514 4142835

Neighbor

gene id symbol gene type direction distance location
CI01000327_04109517_04120130 PXDC1B, PXDC1 coding downstream 19111 4108812 ~ 4120403 (-)
CI01000327_04076770_04104992 ACAD11 coding downstream 34395 4076239 ~ 4105119 (-)
CI01000327_04030403_04035178 ACAD11 coding downstream 104336 4030398 ~ 4035178 (-)
CI01000327_03977537_04002191 NA coding downstream 136501 3976909 ~ 4003013 (-)
CI01000327_03815452_03901112 MYRIP coding downstream 238021 3814997 ~ 3901493 (-)
CI01000327_04179387_04181415 NA coding upstream 35109 4177944 ~ 4181502 (-)
CI01000327_04196209_04202497 GLI3 coding upstream 53155 4195990 ~ 4203470 (-)
CI01000327_04232877_04277027 GLI3 coding upstream 90042 4232877 ~ 4277027 (-)
CI01000327_04315483_04319983 NA coding upstream 172534 4315369 ~ 4320727 (-)
CI01000327_04405469_04408613 CCR9B coding upstream 262174 4405009 ~ 4408613 (-)
G472284 NA non-coding downstream 132851 4006390 ~ 4006663 (-)
G472245 NA non-coding downstream 339647 3799286 ~ 3799867 (-)
G472249 NA non-coding downstream 360144 3778809 ~ 3779370 (-)
G472216 NA non-coding downstream 368431 3770571 ~ 3771083 (-)
G472179 NA non-coding downstream 391587 3744355 ~ 3747927 (-)
G472224 NA non-coding upstream 3962 4146797 ~ 4151898 (-)
G472298 NA non-coding upstream 39835 4182670 ~ 4183023 (-)
G472300 NA non-coding upstream 43214 4186049 ~ 4186565 (-)
G472455 NA non-coding upstream 216790 4359625 ~ 4359998 (-)
G472457 NA non-coding upstream 218255 4361090 ~ 4361289 (-)
G472251 NA other downstream 356846 3781696 ~ 3782668 (-)
G470330 NA other downstream 3865219 273732 ~ 274295 (-)
G472470 NA other upstream 253255 4396090 ~ 4396430 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_023333 prpf4bb coding NC_007135.7 CM002908.2 11469811 ~ 11506064 (-)