CI01000327_04405469_04408613 (CCR9B)


Basic Information

Item Value
gene id CI01000327_04405469_04408613
gene name CCR9B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000327
NCBI id null
chromosome length 4453825
location 4405009 ~ 4408613 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000327_04405469_04408613.mRNA
ATGAATGTCTCTACAACCTCAGACTATGAAAGTGAAGCTGTTAATTTCACAGATTTTACTGACTTGACAACTGATGATGACTACGAATCAGACCTGGGTGGATTATGTAACAAAGAACTAGTGCGACAGTTCAGTAAGACATTCGAGCCCCCTCTCTACTGGATCATCTTTGTCATAGGGGCTTTGGGCAACCTACTGGTTGTCTGCATCTTCACAACTGTGCGAAACCGTCTCAAAACCATGACCGACGTCTACCTGCTGAACCTGGCAGTGGCTGATCTTCTCTTCCTTGGCACATTGCCCTTCTGGGCAACAAATGCTGCTCAGGGCTGGGTGTTCAGCCAGGCCATTTGCAAAGGAGTTTCTGCGGTCTACAAGATTAACTTCTTTGCCAGCATGCTCTTACTCACTTGCATTAGTGTGGACCGTTACATCGCCATCGTCCATGTAACCGAAGCTCACAACTACAAAAACAAACGCATGCTGTATAGTAAGATAACTTGTGTGTTTGTGTGGCTCGCCTCTTGCCTCTTAGCTCTACCGGAATTTCTCTTTGCCAAAGTGAAAATCATAGGCCCCCAGCACAGTTCCTGTGTCATGGTATACTCCATCACAGACAACAATCGTACTAAAGTCTTGGTGTTGGCTTTACAGATCTGTGTTGGCTTCCTTCTCCCATTGCTGGTCATTGTTTTGTGTTACTCAGTCATTATTCGAAAACTCATGCAGGCTCGAAGCTTTGAAAAACACAAGGCTCTGAGGGTCATCTTTGCAGTTGTGGCTGCTTTTGTTCTCTCACAGTTGCCATTCAACGGATATCTGATTATAGAAGCAGGCCAAGCCAGCAATGCCACAATAACGGACTGTGAAGTCATGCAAAGCTTAGATATGGCTGGCCAAATTGTGAAGTGTCTTGCCTACACACATTGTTGCCTGAATCCCATTCTGTACGTCTTTATCGGGGTTCGCTTCCGGAAGGATCTCTTGAGCCTGCTTCAGCGCATGTCCTGTAACCTAGGACTGGTCGACAACAGCAAACTGCAACAAGTTCCCAAGAGGCCTTCTGTTATGTCCGACACTGACACCACCCCTGTTTTTTCCCTATAGGCCTGTCTACTGTACTTACCATATCGACAACTTCTTCAAAAACTTTTTATTCATCTAGAGTGTGTCATTGGCATGTTAATGGCATGATAGACTTATTGTTCAGAGTTATAGGTCCTTATAACCACAAACATTATTGTGCAAGCTCTATGAAATGTACTATTCCTGTATATTTCACTGGGAGTACATGATGGGATATTGTGGAGATTTATGTACATAGATTCTGTTCATGAGCATTTAACCAGCATTTTAAGGATGATTCTAGTTAGAGCAGTATAATGTGTCCTAGAGGTATACTATCATGCTTTTCATACTTTTCTAGCAAAAAATGTTGCAAAATTACTATTGTACAGTGTACATATATTTTGAGAATTTGTAGAATTTGTTGAGTGTAATGGATTTCATTTTGTATTAAAAAAATGGGATAATGACATGAGTTCTGATTTTCTTTTTTTTTAATAAA

Function

symbol description
ccr9b Predicted to enable C-C chemokine binding activity and C-C chemokine receptor activity. Predicted to be involved in several processes, including calcium-mediated signaling; cell chemotaxis; and positive regulation of cytosolic calcium ion concentration. Predicted to act upstream of or within G protein-coupled receptor signaling pathway and chemotaxis. Predicted to be located in early endosome and membrane. Predicted to be integral component of membrane. Predicted to be active in external side of plasma membrane. Is expressed in thymus. Orthologous to human CCR9 (C-C motif chemokine receptor 9).

NR:

description
LOC553366 protein, partial

GO:

id name namespace
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
K04184 CCR9, CDw199; C-C chemokine receptor type 9

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000327_04405469_04408613.mRNA True 1567 mRNA 0.42 3 4405009 4408613

Neighbor

gene id symbol gene type direction distance location
CI01000327_04315483_04319983 NA coding downstream 84282 4315369 ~ 4320727 (-)
CI01000327_04232877_04277027 GLI3 coding downstream 127982 4232877 ~ 4277027 (-)
CI01000327_04196209_04202497 GLI3 coding downstream 201539 4195990 ~ 4203470 (-)
CI01000327_04179387_04181415 NA coding downstream 223507 4177944 ~ 4181502 (-)
CI01000327_04140716_04142767 PRPF4B coding downstream 262174 4139514 ~ 4142835 (-)
CI01000327_04429751_04432240 LZTFL1 coding upstream 21077 4429690 ~ 4432240 (-)
G472461 NA non-coding downstream 27377 4377236 ~ 4377632 (-)
G472459 NA non-coding downstream 30675 4374099 ~ 4374334 (-)
G472457 NA non-coding downstream 43720 4361090 ~ 4361289 (-)
G472455 NA non-coding downstream 45011 4359625 ~ 4359998 (-)
G472300 NA non-coding downstream 218444 4186049 ~ 4186565 (-)
G472437 NA non-coding upstream 13296 4421909 ~ 4426418 (-)
G472470 NA other downstream 8579 4396090 ~ 4396430 (-)
G472251 NA other downstream 622341 3781696 ~ 3782668 (-)
G470330 NA other downstream 4130714 273732 ~ 274295 (-)

Expression


Co-expression Network