CI01000339_02332203_02335402 (ATP6V1A)


Basic Information

Item Value
gene id CI01000339_02332203_02335402
gene name ATP6V1A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000339
NCBI id null
chromosome length 8057057
location 2331610 ~ 2335402 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000339_02332203_02335402.mRNA
TTATATATACAGCTGTTTTTATTGCTGTCAGACCAGTCGGTTTGGTCCTATCTCATTTTCTATTCTGGTGAAATTTGCTCATTTGATGATCAGAGGCTTTACTAGCAACCATCTGTCACCTGACATTCACTGGTTCCTTTCGACAGTCTTCTAGATCTCGTAATTCAGCAGTTGTGGTCGTGGGAAGGCGTTTATTTATTTATTTATCTGTGGTGCGTTAGTATTTCATATCATTTTCATTTGATACTCATCTGTTACAACAGGAAAATAGTGTTAATCTAAATAAATACCGGTATCTGGTAGTATTACTATTTTACTATGTTGACATCAAAGAAGTCTTTAAATTTGTCAGTGGTAATTGCAGTATTTATTATACAAATACGATTGAAACTCGCATTTGCTTTAAAGTATATTGCTTTGAACTGGAGTAATGCAGGAGACCTTGTGGTTCTATTGGAATTATGAAAAATGAAGATTGAAACACGTCTTGGCAATGTTGATTTTAGGTTTGGCATGTGTCTGACAGAAATTGATGCGTATTGAATGACTCTTACTGTCTCACACTTCTGCTTTTAGGTTTCCCAACACACAGGATGGATTTTTCCAAACTGCCTAAGATCCAAGATGAGGACCGTGAGGGTCAGTTTGGATATGTGCATGGAGTTTCAGGCCCAGTGGTGACGGCCTCTAGCATGGCAGGTGCGGCTATGTATGAACTAGTGCGTGTTGGCCACTGTGAGCTGGTGGGAGAGATTATCCGATTGGAGGGAGATATGGCAACCATCCAGCTATCTACAGCTGGAGTTTCTGTCGGAGATCCTGTGCTCCGTACTGGAAAGCCCCTCTCTGTGGAGCTGGGGCCCGGAATCATGGGCTCCATCTTTGACGGTATTCAGCGTCCCCTGAAAGACATCAATGACCTCACGAAGAGCATCTACATCCCCAGAGGGGTTAACATTGGAGCTTTAAACAGGGACCTAAAGTGGGACTTTTCTCCTTTTCAGAACCTGAGGGTTGGAAGTCACATTACAGGGGGTGATATCTATGGATTGGTGTATGAGAACTCTCTCATCAAGCACAAGATCATGCTGCCCCCCCGTAGCAGGGGAACAGTCACCTACCTCGCTCCGCCAGGAAATTATGACGTTTCTGTGAGTCACACTGTCCTTAAATACTATCTCACATTTATAGACATGCACATGAGAGTCATTCACGTCAATCTTATTTGTATAGTGTCTTACAAAGTTAGAAAAACTCCTCAAGATGATGTGGTGCTGGAACTGGAGTTTGAAGGAGTAAAGGAGAAGTTCACCATGGTGCAGGTGTGGCCTGTGCGACAGGTGAGGCCTGTTACTGAGAAGCTCCCTGCCAACCACCCCCTGCTGACTGGACAAAGAGTACTGGATGCCCTCTTTCCTTGTGTCCAAGGAGGAACCACAGCCATTCCAGGAGCCTTTGGCTGCGGTAAGACTGTCATCTCTCAGTCTCTCTCCAAATACTCCAACAGTGATGTCATCATTTACGTTGGTTGCGGAGAGCGTGGAAACGAGATGTCTGAAGTATTAAGAGACTTTCCAGAGCTTACCATGGAGGTGGATGGGAAGGTGGAGAGCATTATGAAGAGAACAGCATTGGTGGCCAACACCTCAAACATGCCTGTGGCTGCCAGAGAAGCCTCCATCTACACTGGTATCACATTGTCTGAGTACTTCAGAGACATGGGCTATAATGTCAGTATGATGGCTGACTCCACCTCTCGATGGGCTGAGGCTCTTAGGGAGATCTCCGGACGATTGGCTGAGATGCCTGCTG

Function

symbol description
atp6v1a Predicted to enable proton-transporting ATPase activity, rotational mechanism. Involved in cellular iron ion homeostasis and cellular response to increased oxygen levels. Located in cytosol; nucleoplasm; and secretory granule. Part of vacuolar proton-transporting V-type ATPase, V1 domain. Implicated in autosomal recessive cutis laxa type IID and developmental and epileptic encephalopathy 93.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000339_02332203_02335402.mRNA True 1812 mRNA 0.45 8 2331610 2335402

Neighbor

gene id symbol gene type direction distance location
CI01000339_02283051_02288143 MPDU1A coding upstream 43345 2282897 ~ 2288265 (+)
CI01000339_02263831_02268085 SLC25A15, SLC25A15B coding upstream 62862 2263831 ~ 2268748 (+)
CI01000339_02250288_02256537 NA coding upstream 74716 2249794 ~ 2256894 (+)
CI01000339_02221790_02222160 NA coding upstream 108865 2221790 ~ 2222745 (+)
CI01000339_02215633_02219758 TP53 coding upstream 111852 2215289 ~ 2219758 (+)
CI01000339_02355753_02358594 ZDHHC23A coding downstream 19757 2355159 ~ 2359747 (+)
CI01000339_02362904_02366296 NA coding downstream 27282 2362684 ~ 2366500 (+)
CI01000339_02369904_02370487 NA coding downstream 33917 2369319 ~ 2371316 (+)
CI01000339_02520632_02526538 DGCR8 coding downstream 183996 2519398 ~ 2526904 (+)
CI01000339_02534217_02550941 ATP6V0A2B, ATP6V0A2 coding downstream 198815 2534217 ~ 2551224 (+)
G481771 NA non-coding upstream 7204 2316933 ~ 2324406 (+)
G481760 NA non-coding upstream 18070 2304061 ~ 2313540 (+)
G481780 NA non-coding upstream 69745 2259215 ~ 2261865 (+)
G481784 NA non-coding upstream 92901 2232241 ~ 2238709 (+)
G481810 NA non-coding upstream 101854 2229478 ~ 2229756 (+)
G481860 NA non-coding downstream 96782 2432184 ~ 2432460 (+)
G481851 NA non-coding downstream 173947 2509349 ~ 2511174 (+)
G481855 NA non-coding downstream 217521 2552923 ~ 2555109 (+)
G481899 NA non-coding downstream 309398 2644800 ~ 2652322 (+)
CI01000339_02196706_02198050 GABARAPL1, GABARAP.L, GABARAP, GABARAPA, GABARAPB, BRAFLDRAFT_122660, GBRAP other upstream 132801 2196307 ~ 2198809 (+)
CI01000339_01571624_01576903 NA other upstream 753907 1571624 ~ 1577706 (+)
G481321 NA other upstream 1040877 1289321 ~ 1290733 (+)
G480761 NA other upstream 1691233 634414 ~ 643423 (+)
G480663 NA other upstream 2153627 177668 ~ 177983 (+)
CI01000339_02821530_02821886 MRPL41 other downstream 485358 2820576 ~ 2823479 (+)
CI01000339_03088452_03091633 NA other downstream 752391 3088110 ~ 3091633 (+)
G483672 NA other downstream 2891921 5227323 ~ 5239784 (+)
CI01000339_05599544_05600935 TIMM8B.S, TIMM8B other downstream 3265059 5599544 ~ 5602261 (+)
CI01000339_06041909_06043927 ATP5L other downstream 3706415 6041817 ~ 6044034 (+)

Expression


Co-expression Network