CI01000339_02215633_02219758 (TP53)


Basic Information

Item Value
gene id CI01000339_02215633_02219758
gene name TP53
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000339
NCBI id null
chromosome length 8057057
location 2215289 ~ 2219758 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000339_02215633_02219758.mRNA
GTATAAATGTGTCTTTTATGTCTAAACATAAACTTTTTGGTTTGCTTTAGCGATCTACAAATGTGTGATTAGCCTGTGAAACAAATTAGCAACTTAGCTAAACGGCATCTTCGCGACTTTGCAATCGCTTCTATGAACGTTTCTACTGAGCTGTCATTCAATAAAAAGTCTTCGCGATGAATTTTACAAACGGGATTTGGTTGTTTAATTAAAAAATTAACGCACTTCGCAAAGAGACAACATCGCGAGCGTGAGGTATTATATTATCGCAATATTTCCCCTAAAGTGTTCAGAGGACTGAAAGTTTTGTATTTTGTTTTAGTTTTGCGAATCTGAAACAGGACATGGCAGAAAATCCGGAGAGTCAAGAGTTTGCTGACCTCTGGGAGCGCAACCTCATTTCAGCTCCAGAAGGTGGCTCTTGTTGGGACATCAGTGATGAGTACCTTCCAAATTCGTTCGACCCAAGTTTATTTAACTTGCTGACTGAACAGCCTCAGCCGTCCACCTCCCCACCGACCTCCACTGTCCCAATTGCCACCGATTATCCTGGTGAACATGGGTTTAAACTGCAATTCCCGCAATCAGGCACTGCCAAATCTGTAACCTGCACGTACTCCCCAGACCTGAACAAGCTCTTTTGCCAGTTGGCAAAAACGTGCCCAGTTCAGATGGTGGTGGACGTTGCCCCTCCCCAAGGCTCGGTGCTCAGAGCAACAGCCATTTATAAAAAGTCTGAGCATGTGGCTGAGGTGGTCCGACGTTGCCCCCACCATGAGAGAACACCTGATACTGATGGATTGGCTCCTGCTGCTCATCTGATCCGAGTGGAAGGAAATTTACGTGCTACTTACAAGGAAGATGACGTCACCTCCAGGCACAGTGTAGTGGTGCCCTATGAAGCTCCTCAGCTGGGAGCAGGATTCACCACAGTATTATATAATTACATGTGCAATAGTAGCTGCATGGGTGGCATGAACCGCCGGCCCATCCTCACAATCATCACTCTGGAGACTCAGGACGGTCAGATGCTGGGCCGCAGGTCTTTTGAGGTGCGTGTCTGTGCGTGCCCAGGCAGAGACAGGAAAACTGAAGAGAGCAACTTCAGGAAAGACCAGGAGACCAAAACCCCAAGCAAGACCCCCTCTACCACCAAACGAAGTATCGTTAAAGAATCATCTTCATCTACGTCTCGACCGGAGGGCAGTAAGAAGGCCAAGATGAGTGTCAGCAGTGACGAGGAGATCTTTTCCCTGCAG

Function

symbol description
tp53 Enables DNA-binding transcription factor activity; identical protein binding activity; and sequence-specific DNA binding activity. Involved in regulation of transcription by RNA polymerase II. Acts upstream of or within several processes, including hemopoiesis; intracellular signal transduction; and regulation of nucleobase-containing compound metabolic process. Located in chromatin. Is expressed in several structures, including digestive system; head; musculature system; nervous system; and reproductive system. Used to study Li-Fraumeni syndrome; aggressive NK-cell leukemia; angiosarcoma; and cancer. Human ortholog(s) of this gene implicated in several diseases, including Li-Fraumeni syndrome (multiple); carcinoma (multiple); hematologic cancer (multiple); open-angle glaucoma (multiple); and pancreatic cancer (multiple). Orthologous to human TP53 (tumor protein p53).

GO:

id name namespace
GO:0090398 cellular senescence biological_process

KEGG:

id description
K04451 TP53, P53; tumor protein p53

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000339_02215633_02219758.mRNA True 1259 mRNA 0.47 8 2215289 2219758

Neighbor

gene id symbol gene type direction distance location
CI01000339_02200730_02206209 GPS2 coding upstream 8725 2200132 ~ 2206564 (+)
CI01000339_02196706_02198050 GABARAPL1, GABARAP.L, GABARAP, GABARAPA, GABARAPB, BRAFLDRAFT_122660, GBRAP coding upstream 17205 2196307 ~ 2198809 (+)
CI01000339_02185977_02193758 CTDNEP1.L, CTDNEP1, CTDNEP1B, CTDNEP1A, DULDA, CTDNEP1.S coding upstream 21131 2185977 ~ 2194158 (+)
CI01000339_02105984_02112628 ERCC6L coding upstream 102331 2105984 ~ 2112958 (+)
CI01000339_01956208_01963122 NA coding upstream 251355 1955603 ~ 1963934 (+)
CI01000339_02221790_02222160 NA coding downstream 2032 2221790 ~ 2222745 (+)
CI01000339_02250288_02256537 NA coding downstream 30036 2249794 ~ 2256894 (+)
CI01000339_02263831_02268085 SLC25A15, SLC25A15B coding downstream 44073 2263831 ~ 2268748 (+)
CI01000339_02283051_02288143 MPDU1A coding downstream 63139 2282897 ~ 2288265 (+)
CI01000339_02332203_02335402 ATP6V1A coding downstream 111852 2331610 ~ 2335402 (+)
G481762 NA non-coding upstream 38989 2173776 ~ 2176300 (+)
G481793 NA non-coding upstream 74810 2140270 ~ 2140479 (+)
G481786 NA non-coding upstream 75512 2136902 ~ 2139777 (+)
G481756 NA non-coding upstream 116353 2098166 ~ 2098936 (+)
G481755 NA non-coding upstream 117814 2097153 ~ 2097475 (+)
G481809 NA non-coding downstream 9364 2229122 ~ 2229402 (+)
G481810 NA non-coding downstream 9720 2229478 ~ 2229756 (+)
G481784 NA non-coding downstream 12483 2232241 ~ 2238709 (+)
G481780 NA non-coding downstream 39457 2259215 ~ 2261865 (+)
G481760 NA non-coding downstream 84303 2304061 ~ 2313540 (+)
CI01000339_01571624_01576903 NA other upstream 637586 1571624 ~ 1577706 (+)
G481321 NA other upstream 924556 1289321 ~ 1290733 (+)
G480761 NA other upstream 1574912 634414 ~ 643423 (+)
G480663 NA other upstream 2037306 177668 ~ 177983 (+)
CI01000339_02821530_02821886 MRPL41 other downstream 601002 2820576 ~ 2823479 (+)
CI01000339_03088452_03091633 NA other downstream 868035 3088110 ~ 3091633 (+)
G483672 NA other downstream 3007565 5227323 ~ 5239784 (+)
CI01000339_05599544_05600935 TIMM8B.S, TIMM8B other downstream 3380703 5599544 ~ 5602261 (+)
CI01000339_06041909_06043927 ATP5L other downstream 3822059 6041817 ~ 6044034 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location