CI01000339_01956208_01963122


Basic Information

Item Value
gene id CI01000339_01956208_01963122
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000339
NCBI id null
chromosome length 8057057
location 1955603 ~ 1963934 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000339_01956208_01963122.mRNA
GCATAAATACAAATAATTATGGACCATATAGTTTTACCAGTGAAAATAGAAAAATTAATGTTGTGTCCATTAATGGAAAAATTCAGAAGCCTGTTTTTAAAAGGCTGAGTTGCAAGCCAACAAGCTTATTAATAAAATCAAACAATAGCATTGTCTATGGGTACGTTTCTATATAGGCCTATGCTTAAAACGGAGTTTTTTCCTTTGAGTTTTCTGCGTACAGACGACACCATTGTCAAAACGATCCCCATTCACACGGATCCGCGAAAACGACTAAAAACGCTGTATTCTGCTGCCAGGCCATTAGATAGCGATGAAACACCATAGACCGAACATGTAATAGCAAGAGACTATAGAATAACACAAGACGCGAAAAATACCGTTTTTTGACAAGATTCGAGCGTTTAGAAACAAAATTTATGAGACAGCTGTTGTTAGATTTCATTGGTGATTTCAAATATTAAATTTAATCAAAAGCTTGGCAAACAGCTTTGGAGAATTTGATGTTTCCCCATTCAAAGACATAGGAGCTGCACTTGAATGGAGTAGCATCTGCCTGCACAACCGGAGGCTGCATTTTCAGGACCGCATTTCTAGGACCCTAGATGTTTAGTGACAACGCCACCTACCGAATTACAGGACCAGTGACCGCATATTTTTCTGGAAGTTGGACGATATTCAGAAAACACATAACAATCCAAGAAAGGAGATCCTTTCCTAAAGAGATGCACCACATGCTGCAAGGAGTTCCTCTGCCCGTTTTGCAGTTCTGCTTTGTTTCACCCAACAAAGTTGATCAAAACCATCATATATGGCCTGGCTGGGCTGCAGAATTTCTCTGCGGGATGTTGAGTAGGCCTTCTTCTCTAGTCCGGAATATCATCACAGTGATTATGTTCTCCATTTACTATTTCAGTGAAGTGGAAGAAAAGAGAAAAGAGGGGAGAACATCCATTGTATCTAGTAACACATTTCAAATGACAATGCCTTCTCAAACTGGCCAGTTTCAGCGCCCTGTTTTTATGCCAGAAACTTTTACAAGGGCAGGCCGGGAATGGGCAGACTGGTCTGAACAGTTTGAGATGGCAGCTGAAGTGAATGGTTGGGATGAAACATTAAAACTGAAGTTTATGTCCTTACTGTTATCAGGCAAGGCAAGAGATATATATAGTGGATTGACCCTGAATGATAAAGCTAATTATCAAAGTTTAAAAGCTGCTATGACCAAATGTCTACAACCTTGTAATAGTGATGAATGGAATCGTGTAAACTTTACATCACAAAAGCGTTTCTCTAGTGAAACAGCCAGAGAATTTGGCAATGCTTTGAGGCGTTTAGTTGGTAAAGCCTATCCTTCTGTAGATTTTGCTACACAAGATCTTTTAGCAAAAGATCAGTTCATAACAAACATTGGTCGTACTGACTTGCGGGTTCAACTCCGAACAGCCAAATTAAAGACTTTAGAGGAGGCTATTAATGTAGCTGCTGAACTTGAACTTATAAGAGAATTAGAACAAAATTCTTCCCATGCAGATGCTAGAGTCCGGGGTTTGACAGATGGCTCTTCCCCTGACCCCCAATTTCATGCCTTATTGGAGGTTGTAGAGGGTTTAAGGCAGGAAGTTAAAACTCTACAGGTTACTGTACAAAATATGCACAGAGAGGAGTGGACAGTAGGGAAGACAGAAACCGTAGAGTTATGGAGTTATGAAGTTGTGAAATTAATCAGCAAAATGCACGTCTCGAGTCAAGTTCTGAACAGCAACTGGAACTACCAGTCCACGGCCCTGTTATCCACGGAATCTCCGCCAGACCAGGGCCCTCTTTTCTTCGCGCTCACCTCACCACAAATCTGCTAAGCCATGGCTTTCTTGTCCACACAGTCCCGGCCAATCCACAGCCCTCCACGTGAACCTCGCAAGTCCACACGCTCCCGTGAATCTGTCAGTTCATGGCCGTCTTATCCACACGCTCCTCTGTTCCACGGTGGAGAAAAAACTCTTGCCACACTACCCTCCTCAAAGCAGCAGTTATGAGCAGACGAGACGTGGGAACACGTACGAAAAAACACAGAATACTTACAATACCAATAAGTAACAATGATTTTAGATAAACCACATTTGTTCCATTCTTTTGTTTCTATTGCTAAAGTAAGTGTTGAACCTTCTTCTCCTGCATCCTATTCTTCTGTGATCCAGAATGGCTACACAGCTGAGAGGTTTGTTTGAGCTGTGCCCTCTACTGTACAGGAGTGAGTTTGCATTTTCTTCAGCACTGAGGCTTATTCATTTCACTTTTTGTGTGAAAAGGCATTTACATTTGCCAAAAACATATATATATATATATTTTTTCCTAGTAAAAAAAATAAGCAAGCTCAGCCCAGGTGCGAAAAAGTAAAGCAAAAGTAACAACGCATTACTTGAATGGAATGATGGCACTTGTTCGGACCGTCCCTGTTTGCCAGATCTGAGCCACAAGCAGGCCATAGCAATGCCACATGCAGTGTTGGGGGTAACGCGTTACAAGTAACGTGCGTTACGTAATCAGATTACTTTACTGAAGTAACGAGTACAGTAATGCATTACTTTATAAATTTACACATTAATATTTGAGTTACTTTTTAAAAAAAGTAATGTGAGTTACTTTTCAGTTTAATTTGAATTAAAAAAAA
>TU552517
TAAAAACGCTGTATTCTGCTGCCAGGCCATTAGATAGCGATGAAACACCATAGACCGAACATGTAATAGCAAGAGACTATAGAATAACACAAGACGCGAAAAATACCGTTTTTTGACAAGATTCGAGCGTTTAGAAACAAAATTTATGAGACAGCTGTTGTTAGATTTCATTGGTGATTTCAAATATTAAATTTAATCAAAAGCTTGGCAAACAGCTTTGGAGAATTTGATGTTTCCCCATTCAAAGACATA
>TU552524
AAACGTCAGCATCATTGTTCTTTACCCATATACGCACCATATCCATTTTAGGGAGTAAACATTCAAATGAACAAAACCTATCCCAGATCTAATTTTAAAATCTGCCGGAGTAGGATAAGTAGTTGTAACATCTTGTGGACCTGGATTTAGTGCAACATTCCCTGAGATCAGTAGCAGCAACATTATCATACTTTTGCGCAAAACTGATAGGTAAAGAGTCCCCATTCGTTGATGTTACATGTTGAAAAAAACAGGGCATAACATAGTGAGAAACATGATGATAAGACTTCATCAAGACCATGTGTAGATGATTTAACACACATAAATTCTGACGGTCATTCGCAGACAGTAAAACACAGGTATATCTCCCAGTATGAGTCTCATTTGGCCAGTGCACGTAAATACCAAAATCTAATTGTCCAGAGAACATAGAAGAATGATTGCCAATATCACAACTTGTTAGAATATAGCATAAGATGATTAGAATCAACATAGTTATTCTCCAGTTTTCGTGCCACATTGTGCCTTTTAATAATTAAGTCCACAGGAAGACAGAAACCGTAGAGTTATGGAGTTATGAAGTTGTGAAATTAATCAGCAAAATGCACGTCTCGAGTCAAGTTCTGAACAGCAACTGGAACTACCAGTCCACGGCCCTGTTATCCACGGAATCTCCGCCAGACCAGGGCCCTCTTTTCTTCGCGCTCACCTCACCACAAATCTGCTAAGCCATGGCTTTCTTGTCCACACAGTCCCGGCCAATCCACAGCCCTCCACGTGAACCTCGCAAGTCCACACGCTCCCGTGAATCTGTCAGTTCATGGCCGTCTTATCCACACGCTCCTCTGTTCCACGGTGGAGAAAAAACTCTTGCCACACTACCCTCCTCAAAGCAGCAGTTATGAGCAGACGAGACGTGGGAACACGTACGAAAAAACACAGAATACTTACAATACCAATAAGTAACAATGATTTTAGATAAACCACATTTGTTCCATTCTTTTGTTTCTATTGCTAAAGTAAGTGTTGAACCTTCTTCTCCT

Function

NR:

description
hypothetical protein EH28_21738

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000339_01956208_01963122.mRNA False 2671 mRNA 0.41 6 1955603 1963934
TU552517 False 252 lncRNA 0.35 1 1955877 1956128
TU552524 True 1043 lncRNA 0.41 1 1962395 1963437

Neighbor

gene id symbol gene type direction distance location
CI01000339_01912848_01913912 CX39.9 coding upstream 40657 1910344 ~ 1914946 (+)
CI01000339_01907032_01908985 GJB1, CX27.5, CXB1 coding upstream 46447 1907032 ~ 1909156 (+)
CI01000339_01895957_01896819 KAT5B, KAT5, KAT5A coding upstream 58613 1895957 ~ 1896990 (+)
CI01000339_01891016_01895840 KAT5B, KAT5, KAT5A coding upstream 59763 1891016 ~ 1895840 (+)
CI01000339_01730717_01733784 NA coding upstream 221503 1730717 ~ 1734100 (+)
CI01000339_02105984_02112628 ERCC6L coding downstream 142050 2105984 ~ 2112958 (+)
CI01000339_02185977_02193758 CTDNEP1.L, CTDNEP1, CTDNEP1B, CTDNEP1A, DULDA, CTDNEP1.S coding downstream 222043 2185977 ~ 2194158 (+)
CI01000339_02196706_02198050 GABARAPL1, GABARAP.L, GABARAP, GABARAPA, GABARAPB, BRAFLDRAFT_122660, GBRAP coding downstream 232373 2196307 ~ 2198809 (+)
CI01000339_02200730_02206209 GPS2 coding downstream 236198 2200132 ~ 2206564 (+)
CI01000339_02215633_02219758 TP53 coding downstream 251355 2215289 ~ 2219758 (+)
G481522 NA non-coding upstream 2010 1953352 ~ 1953593 (+)
G481392 NA non-coding upstream 47570 1906851 ~ 1908033 (+)
G481372 NA non-coding upstream 50967 1900905 ~ 1904636 (+)
G481396 NA non-coding upstream 55481 1851434 ~ 1900122 (+)
G481538 NA non-coding downstream 5134 1969068 ~ 1969818 (+)
G481544 NA non-coding downstream 15181 1979115 ~ 1979329 (+)
G481730 NA non-coding downstream 80472 2044406 ~ 2044646 (+)
G481738 NA non-coding downstream 102194 2066128 ~ 2066496 (+)
G481739 NA non-coding downstream 105948 2069882 ~ 2070123 (+)
CI01000339_01571624_01576903 NA other upstream 377900 1571624 ~ 1577706 (+)
G481321 NA other upstream 664870 1289321 ~ 1290733 (+)
G480761 NA other upstream 1315226 634414 ~ 643423 (+)
G480663 NA other upstream 1777620 177668 ~ 177983 (+)
CI01000339_00069245_00092819 CORO1C, CORO1CA other upstream 1878011 69245 ~ 93266 (+)
CI01000339_02821530_02821886 MRPL41 other downstream 856826 2820576 ~ 2823479 (+)
CI01000339_03088452_03091633 NA other downstream 1123859 3088110 ~ 3091633 (+)
G483672 NA other downstream 3263389 5227323 ~ 5239784 (+)
CI01000339_05599544_05600935 TIMM8B.S, TIMM8B other downstream 3636527 5599544 ~ 5602261 (+)

Expression


Co-expression Network