CI01000339_00069245_00092819 (CORO1C, CORO1CA)


Basic Information

Item Value
gene id CI01000339_00069245_00092819
gene name CORO1C, CORO1CA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000339
NCBI id null
chromosome length 8057057
location 69245 ~ 93266 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000339_00069245_00092819.mRNA
ATATGTTCAGACGGGTTGTACGACAGAGTAAGTTCCGGCATGTGTTCGGCCAGGCGGTGAAGAATGACCAGTGCTACGATGACATCAGGGTGTCCCGGGTCACGTGGGACAGCGCCTTCTGCGCGGTTAACCCCAAATTTGTTGCCATAATCGTGGATGCTAGTGGAGGTGGCGCGTTTATGGTTTTGCCTCTTCATAAGGTCTTGCACAGCTCTTTGTTTCCCAAAAAAATCTGTATGGGAACTCCTCATCCTCACTTGATTCCCCAAAATCCTCAGACCCATGCGTCTGTCTATTGTTTCCCAGTGTGGCAGATCCCAGAGAATGGTTTGGTGACCTCCATGTCCGAGCCAGTGGTGGTGCTGGAGGGTCATTCTAAAAGAGTGGGAATCATTACCTGGCATCCAACCGCCCGCAACGTCCTCCTCAGTGCAGGCTGTGATAATGTGATTTTCATCTGGAATGTGGGCACGGGAGAGTCCATGATCACCCTGGAGGATATGCACCCTGACATCATCTTCAGCGCCTGCTGGAACCGCAATGGCAGTCTCATCTGCACTGCCTGCAAGGACAAGAAAGTCCGTGTCATCGACCCACGCAAGGAGGAGATCATTGCGGAGAAGGACAAGGCCCATGAGGGCGCCAGGCCCATGAGAGCTATTTTCTTGTCTGACGGCAAAGTGTTCACCACTGGTTTTAGCCGCATGAGCGAGAGACAGCTCGCCCTCTGGGATCCGGAAAATATGGAGGAGGCGATCTCTGTCCATGAGATGGACACCAGTAATGGAGTCCTCCTGCCCTTCTATGATCCCGATACTAATGTGGTCTACCTGTGTGGAAAGGGTGACAGCAGCATCCGTTACTTTGAGATTACGGACGAAGCTCCCTTTGTCCATTACCTCAACACCTTTACCACTAAGGAGCCTCAGAGGGGCATGGGATACATGCCCAAGAGAGGGCTGGACGTCAACAAGTGTGAGATCGCAAGGTTTTACAAACTGCATGAGAGAAAGTGTGAGCCTATCATCATGACCGTGCCAAGAAAATCGGACCTGTTCCAGGATGACCTTTACCCTGACACGGCAGGTCCAGAAGCCCCCCTGGAGGCCGAGGAATGGTTTGAAGGGAAGAATGGAGACCCTGTCCTGATATCCCTGAAACATGGATACATCCCAGGCAAGAACCGCGATCTCAAAGTGGTCAAGAAGAACATCCTAGACAACAAGATGAGCAAGAATACAGAGAATACTGCCCCTGCCATCAAGACTGCCACCTCCACGCCATCTATCAAAAGTGAAGCTAAGCTGGATGAGGTTTTGAAAGAAATCAAATCTCTCAGAGAGCTGGATATCCCATTGGCCAGGTGGGCGGGACCCGTCACTGCCAATCACCATGACAGCGTTCCGTCTGAAGCCTGCCTCGCAAAGACTCCAAAACACATTCCAAGATGATCAATTATTCCTTTTGCAATCCCCAAAACCTGTTTACACCTCATAGCCATTTGGAAAACTATAAACGCCTTCGGTTTATTTCTAAATTTGACCCGTTTAGCTTTTACTCCAAATCTCACTCCAAATCTTTCTGCAATGGCTGTGTTTTATCTGGTGTTCTTGAATGGTCTTAAGTTTTTTGTTTTGTTTTTCTTATTAAAAATTGTGACCAAGAAGCTTGCTTTATGAAGCAGTTACATGAACTTGATGAGCTCAAAGTTTGAAGTAGCCATCAGTATTGCAGTTCCTCTCTTGCCCTTCTGAGTTGCCAAATTTATAGAGGAGTTATGCACCTCCCTGACAGTATTTGACTAGCTTTTCATTTTGTACTTATAAGGGACAAAGCAATATGCTAGTAATGCAAGGAGAGGAAATCATTGGAACCATTTGTCAATGTCTTTCTAAAGA

Function

symbol description
coro1ca Predicted to enable actin filament binding activity. Involved in neural crest cell migration. Predicted to be located in endosome membrane. Is expressed in several structures, including digestive system; nervous system; neural tube; periderm; and solid lens vesicle. Orthologous to human CORO1C (coronin 1C).
coro1c Enables actin filament binding activity. Involved in several processes, including endosome fission; endosome membrane tubulation; and negative regulation of cell-substrate adhesion. Located in several cellular components, including endosome membrane; lamellipodium; and lateral plasma membrane. Colocalizes with vesicle.

GO:

id name namespace
GO:0030036 actin cytoskeleton organization biological_process

KEGG:

id description
K13886 CORO1B_1C_6; coronin-1B/1C/6

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000339_00069245_00092819.mRNA False 1898 mRNA 0.48 11 69245 93266

Neighbor

gene id symbol gene type direction distance location
CI01000339_00040401_00044825 NA coding upstream 24080 40156 ~ 45165 (+)
CI01000339_00014867_00022451 SSH1A, SSH1 coding upstream 46587 13126 ~ 22658 (+)
CI01000339_00095291_00096742 NA coding downstream 2025 95291 ~ 97825 (+)
CI01000339_00104544_00105929 NA coding downstream 10425 103691 ~ 106266 (+)
CI01000339_00112995_00113192 NA coding downstream 19345 112611 ~ 113192 (+)
CI01000339_00117608_00135474 SART3 coding downstream 24342 117608 ~ 135672 (+)
CI01000339_00188554_00189543 NA coding downstream 95131 188397 ~ 190178 (+)
G480644 NA non-coding upstream 31650 36370 ~ 37595 (+)
G480657 NA non-coding downstream 66726 159992 ~ 160961 (+)
G480658 NA non-coding downstream 68539 161805 ~ 162032 (+)
G480662 NA non-coding downstream 83281 176547 ~ 176901 (+)
G480699 NA non-coding downstream 237042 330308 ~ 330724 (+)
G480700 NA non-coding downstream 241051 334317 ~ 334711 (+)
G480663 NA other downstream 84402 177668 ~ 177983 (+)
G480761 NA other downstream 541148 634414 ~ 643423 (+)
G481321 NA other downstream 1196055 1289321 ~ 1290733 (+)
CI01000339_01571624_01576903 NA other downstream 1481268 1571624 ~ 1577706 (+)
CI01000339_02196706_02198050 GABARAPL1, GABARAP.L, GABARAP, GABARAPA, GABARAPB, BRAFLDRAFT_122660, GBRAP other downstream 2103334 2196307 ~ 2198809 (+)
CI01000339_00210534_00211598 NA coding downstream 60223 210059 ~ 211601 (+)
CI01000339_00214390_00215412 NA coding downstream 64170 214006 ~ 215884 (+)
CI01000339_00225794_00226825 NA coding downstream 74792 224628 ~ 226961 (+)
CI01000339_00336428_00365467 LIMK2 coding downstream 186047 335883 ~ 366764 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_029987 coro1ca coding NC_007116.7 CM002889.2 20319519 ~ 20419863 (+)