G480644


Basic Information

Item Value
gene id G480644
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000339
NCBI id null
chromosome length 8057057
location 36370 ~ 37595 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU551564
TGAGTACACCCCTAAGTGAAAATGTCCAAATTGGGCCCAAAGTGTCAATATTTTGTGTGGCCACCATTATTTTCCAGAACTGCCTTAACCCTCTTGGACATGGAGTTCACCAGAGCTTCACAGGTTGCCACTGGAGTCCTCTTCCACTCCATCACAGAGCTGGTGGATGTTAGTGACCTTGCGCTCCTCCACCTTCCGTTTGAGGATGCCCCACAGATGCTCAATAGGGTTTAGGTCTGGAGACATTCTTGGCCAGTCCATCACCTTTACCCTCAGCTTCTTTAGCAAGGCAGTGGTCGTCTTGGAGGTGTGTTTGGGGTCGTTATCATGTTGGAATACTCCGAAGGGAGGGGATCATGCTCTGCTTCAGTATGTCACAGTACATGTTGGCATTCATGGTTCCCTCAATGAACTGTAGCTCCCCAGTGCCGGCAGCACTCATGCAGCCCCAGACCATGACACTCCCACCACCATGCTTGACTGTAGGCAAGACACACTTGTCTTTGTACTCCTCACCTGGTTGCTGCCACACACGCTTGACACCATCTGAACCAAATAAGTTTATCTTGGTCTCATCAGACCACAGGACATGGTTCCAGTAATCCATGTCCTTAGTCTGCTTGTCTTCAGCAAACTGTTTGCGGGCTTTCTTGTGCATCATCTTTAGAAGAGGCTTCCTTCTGGGACGACAGCCATGCAGACCAATTTGATGCAGTGTGCGGCGTATGGTCTGAGCACTGATAGGCTGACCCCCCACCCCTTCAACCTCTGTAGCAATGCTGGCAGCACTCATACGTCTATTTCCCAAACACATCCTCTGGATATGACGCAGAGCACGTGCACTCAACTTCTTTGGTCGACGATGGCGAGGCCTGTTCTGAGCGGAACCTGTCCTGTTAAACCGCTGTATGGTCTTGGCCACCATGCTGCAGCTCAGTTTCAGGGTCTTGGCAATCTTCTTATAGCCTACGCCATCTTTATGTAGAGCAACAATTCTTTTTTTCAGATCCTCAGAGAGTTCTTTGCCATGAGGTGCCATGTTGAACTTCCAGTGACCAGTATGAGAGAGTGAGAGCGATAACACCAAATTTAACACACCTACTCCCCATTCACACCTGAGACCTTGTAACACTAATGAGTCACATGACACCGGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU551564 True 1154 lncRNA 0.50 2 36370 37595

Neighbor

gene id symbol gene type direction distance location
CI01000339_00014867_00022451 SSH1A, SSH1 coding upstream 13712 13126 ~ 22658 (+)
CI01000339_00040401_00044825 NA coding downstream 2561 40156 ~ 45165 (+)
CI01000339_00069245_00092819 CORO1C, CORO1CA coding downstream 31650 69245 ~ 93266 (+)
CI01000339_00095291_00096742 NA coding downstream 57696 95291 ~ 97825 (+)
CI01000339_00104544_00105929 NA coding downstream 66096 103691 ~ 106266 (+)
CI01000339_00112995_00113192 NA coding downstream 75016 112611 ~ 113192 (+)
G480657 NA non-coding downstream 122397 159992 ~ 160961 (+)
G480658 NA non-coding downstream 124210 161805 ~ 162032 (+)
G480662 NA non-coding downstream 138952 176547 ~ 176901 (+)
G480699 NA non-coding downstream 292713 330308 ~ 330724 (+)
G480663 NA other downstream 140073 177668 ~ 177983 (+)
G480761 NA other downstream 596819 634414 ~ 643423 (+)
G481321 NA other downstream 1251726 1289321 ~ 1290733 (+)
CI01000339_01571624_01576903 NA other downstream 1536939 1571624 ~ 1577706 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
mexican tetra (Astyanax mexicanus) G65677 NA non-coding NC_035903.1 CM008306.1 21371062 ~ 21372122 (-)