CI01000339_00040401_00044825


Basic Information

Item Value
gene id CI01000339_00040401_00044825
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000339
NCBI id null
chromosome length 8057057
location 40156 ~ 45165 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000339_00040401_00044825.mRNA
ATTTAAAAGGAGTGCTTCTATTTTTACTGGTAACATTTCAACAGGGCATCTGTATTTTAATTTAAGTACAAGATTTGTGTACTTCATCCTCCACTTTGAACTAATGAACTTTTTAGCAGTTAATACCAGAGACAAAGAGCCTTTCATTGCCATTAAAAAAATGACAAGGAAAACAGAGCAAAATCAGTTAAAACAAACAAAACATGTCAAGTTTGACTGTGATTACAGGAATGAGCTCATCCGAAATGACAAGTAGAGACAGAAAGGTGAAAGACACAGTGAACATAAAACTGTGTACAGGGGAGTTAAAGTGTGGGAGAATTTCAGATAAACACTGGCATAACCTGCATGCCAGAGTCATGCAATCATCAACATCTTGTGGTCCACCACAATACACTGCCAATAACATCTCTCTTTCTTTTTTCCACAGAATGGGACAAAACCAGGTCAAGGAGGGGGAGCCAGGGCAGGACAACAGCTCTGCAGGACCAGAGGAAAAGGGACCAAGCCCAGACCCTGGGGGGGCAAAAGAGGAAGGAAATCCAACCATTGAGACTCATGGTGTCGGGACAGATGAGGAGAAAGCAGCCGATGGAAGGTTGGATGGAGGCCCAGGCAGGGAGTTACCATCACCTACACCAGAGCACAGTTTGGATTTTCATAAGGTGTGTGCTCCCACGGATGGGGGGGTTGTGGAGGGAGGGGATGGCGAGAAAGTGGGAGGAAGAAAGAGTAGCGAGGAAGGCAGAGCTGAACTGCTGGCTCCACAGCAGCTGAATGGAATCACACAGTCTAACAGCTGCCTGCAAGGCACATGGGAGGCTGGTGAACCTGATCACGAGAGAAAAGACTTGAAGAGTATGCTAGAAGACTATCTTAAACATCAGGAAAACCTCGGGTGCGACTTTCCTGGTAAAGACAAAGTTGAAAGTGCTCACAAAGGAGAAAACAAGAGTAAGAATTGTGCTTCATATGTAAAGGACGAAATGGAGTCTGTTTTTGGAGATGACGACAAGCTAAAGTGCCAGGAAGGGGACAGAAAACTAGATGTTGATGCTGCCTGTGATATTAGCTTAACAAATACAGGGCCTACTTTGGAGATTCTGGAAAGGAAGGACATTTCGAAATCAAGTGGTGGGGACGCCAACACCAACGTTCACTTTACGGTTCAAGACAAAGCTTTGCTCATTACGGAAAACGTAGACTTGAAGACCAGCATGACTGAATCACAAAACAAGAGGCCGTTTAACAAGCCCAGCACATCAAACCCCGTGATGAACTCACAAATGGAGACATCAAAGGACATTACTGAGGCAATTCAGCAAGTCAAAGAAGGAATAAGGGAGAAGCCGCCAGAGAATCCAGATAAGGTTGTAAAAGAAACCTTAAACACTGAACATTCTTCCCCGAAGAACGTCGAAACCCAGGGGCGGTCAATGAAGGTTGTCAGCGAAGCCAGAGAAAACGTTACATGGTGTCAGCCAACAGATGATGTCATGAAGACCAGATTTACTAGTTCATGGCTGGCAGGTGCGGATTTACAAAAAAAAGCTGTGAGCCTAGAACGAGCGCAGAGCCCAGAGGACCTCAGCCCCTTAGAAGTGGCATCCAAGTCATCTCAGGGTCACGCTGAGAGCCATCGGCAAATATCTGCAGGCGAATTCACACAGGATGAGCTTCAGAAAGAAAGGCAATTTAATGTGTCAGACTTGGAGAGCCCTAGGACAAAGGAACCTTCACTTGAGAGATCACCCGCTGGAGGTCATAAAAATAAAGATGGCATAAGAGAGACTGAAGAAAGTGAAAATCTGGAATCTGCTTCAAAGGGCCTCTATCGTTCCCATGCAAAGAAAACCGAGATAAAAGATCTTTCTCTGCGTGGAACAGAAACGGAAGAGGGTTGTTTTGTGACATCTAATATTGCCAGTGTAAGTATGCTGGCTGAAAACAATCCCTTGCTACAAAGCTATGAAGATGAGAAATGTATTACATTCTCTGAAGCCATTACGGATTCATACCCCCCTTCTAAATCTGATGTTCAAGTTATGCAAAAAGATGAAAAAGAGGATTCCCCTCTTTCAGCAAAGGCCAAAGAACACAGAGAGATAAGTCTAGAGTGGTTTCTGGCTGAAACGAGTCCATATGCAGTGATACAAACCTTTCCAGAGACAGTGAAGGATACTACTCATAGGATGGATCCAGAAAGTACATCTTCTTTAAGCGCAGTGATTGATGTAGAAGATGCTACTAAACAGCAGAGAACAGAGGGAGATGCTAACGCTAACTTAGGCGACTTGACATCATCAGAGAGAGACAAGGTCAGCAAGTCTAATCAGAATACCATCAGCTCAAAAACGGACGTGCGTAAGGAAACATCTGCAAATAGTTCCATCTCTGAGCTCATTGCTGGTCCTGAGACAGCTTCAAGTCCCATAGATGACAGGCTAGGCATGGACAAGAAAACAGAAGTCACTCTGTCTGGTTCTTCTCAACTCCAAGGGCAATGTTTTTTGAATATTTTAACAAATGCACCAACCCATTCCGTTTTAAGCCAGACAGATGTATATGATCAGGTCCAGAATGGTTGTACTGCATTAGTAGACAGGACAGCAAACACATCTGCTGCACAAGATGTGCTACATTCCTCCTCCATGTGCAACCTAATAAGTATGCAAGCTAACGAGAAACAAGATAAAGAGCAGAACAAGCTGTCGACACAAGCAAATTTTCGTGTTTTAGAGGAGAAACATTTAAGCCAGCTTGACCAAAAGCTTGCGATAGAAAGCAACCTGACCACCATCATGGAAACACCGCAGGGTGCACAGAAAAGACATGTTTCAGATATGATAAAGGAAACTATTGAGTTGCAGAAGAAGATGAAGGAGTGGACCAAGCCGGCTGATGTCCGGGTTGATCTGACCTTAGATCCAACACAGTCTGTGAAAGTTTCACAAATGAAAGCAGCATTTGATCCACCAAAGAAATCACCTGACAAAGCACTAGAGAGAAAACCTTCAGTGAGAAAAGGTGTGGATTATCGTGTCATATCTGAGAGGGTGGATGCATTATAAACTATCTTAATACAATGTGATGTCTGTTTGGAGGGTTTCTTAAAGGTGCACTCAGTAATTTACTTGTTAAAGTTTTACACAGAGAAATGAACAACTTTTGTTAAATATCATTGAAATGATGATACACTTGAGATGAAGACTCAAGTCAAGTCATATCAGTCTTTTAGATAAAGTTGTTTTCTACATTGAGTCTTGGAGTGGGTCAACGTTTTATGGGTGCTGCCATGTTGACGTCACACAATTGGTCTTGTCATACAGTTGACAGGGTCTCTAATAATGTGTTTAATGTAAAACAGAGCTGAGATTAAGGATAAAAGTGGGGCATTTTTTAAAAATCTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000339_00040401_00044825.mRNA True 3411 mRNA 0.43 2 40156 45165

Neighbor

gene id symbol gene type direction distance location
CI01000339_00014867_00022451 SSH1A, SSH1 coding upstream 17498 13126 ~ 22658 (+)
CI01000339_00069245_00092819 CORO1C, CORO1CA coding downstream 24080 69245 ~ 93266 (+)
CI01000339_00095291_00096742 NA coding downstream 50126 95291 ~ 97825 (+)
CI01000339_00104544_00105929 NA coding downstream 58526 103691 ~ 106266 (+)
CI01000339_00112995_00113192 NA coding downstream 67446 112611 ~ 113192 (+)
CI01000339_00117608_00135474 SART3 coding downstream 72443 117608 ~ 135672 (+)
G480644 NA non-coding upstream 2561 36370 ~ 37595 (+)
G480657 NA non-coding downstream 114827 159992 ~ 160961 (+)
G480658 NA non-coding downstream 116640 161805 ~ 162032 (+)
G480662 NA non-coding downstream 131382 176547 ~ 176901 (+)
G480699 NA non-coding downstream 285143 330308 ~ 330724 (+)
G480700 NA non-coding downstream 289152 334317 ~ 334711 (+)
G480663 NA other downstream 132503 177668 ~ 177983 (+)
G480761 NA other downstream 589249 634414 ~ 643423 (+)
G481321 NA other downstream 1244156 1289321 ~ 1290733 (+)
CI01000339_01571624_01576903 NA other downstream 1529369 1571624 ~ 1577706 (+)
CI01000339_02196706_02198050 GABARAPL1, GABARAP.L, GABARAP, GABARAPA, GABARAPB, BRAFLDRAFT_122660, GBRAP other downstream 2151435 2196307 ~ 2198809 (+)

Expression


Co-expression Network